Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QQX03_RS09315 Genome accession   NZ_CP127221
Coordinates   1863630..1864688 (-) Length   352 a.a.
NCBI ID   WP_285975467.1    Uniprot ID   -
Organism   Altererythrobacter rubellus strain NBRC 112769     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1858630..1869688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX03_RS09305 (QQX03_09305) alaS 1859884..1862535 (-) 2652 WP_285975465.1 alanine--tRNA ligase -
  QQX03_RS09310 (QQX03_09310) - 1862586..1863416 (-) 831 WP_285975466.1 class I SAM-dependent methyltransferase -
  QQX03_RS09315 (QQX03_09315) recA 1863630..1864688 (-) 1059 WP_285975467.1 recombinase RecA Machinery gene
  QQX03_RS09320 (QQX03_09320) - 1865080..1867542 (-) 2463 WP_285975468.1 response regulator -
  QQX03_RS09325 (QQX03_09325) - 1867539..1868126 (-) 588 WP_285975469.1 DUF2062 domain-containing protein -
  QQX03_RS09330 (QQX03_09330) smpB 1868279..1868761 (-) 483 WP_285975470.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37738.23 Da        Isoelectric Point: 5.1874

>NTDB_id=842696 QQX03_RS09315 WP_285975467.1 1863630..1864688(-) (recA) [Altererythrobacter rubellus strain NBRC 112769]
MATNLKLVEKESSVDRQKALDAALAQIDRAFGKGSAMKLGSKEAMNVESISTGSLGLDIALGIGGLPKGRVIEVYGPESS
GKTTLALHVLAEAQKNGGTVAFVDAEHALDPVYAKALGVDIDELIISQPDTGEQALEITDTLVRSNAIDVLVVDSVAALV
PRAEIEGEMGDTHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDEVVGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWFSYDSIRIGQGRENAKTYLK
ENPEICDKLEAAIRGRTDEVAGEMMAGPDAEA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=842696 QQX03_RS09315 WP_285975467.1 1863630..1864688(-) (recA) [Altererythrobacter rubellus strain NBRC 112769]
ATGGCGACTAATCTTAAACTGGTTGAAAAGGAATCATCCGTGGATCGTCAGAAGGCGTTAGACGCTGCACTTGCACAGAT
TGATCGGGCCTTTGGTAAAGGTTCGGCAATGAAGCTGGGCTCCAAAGAAGCGATGAACGTCGAATCGATTTCGACCGGTT
CGTTGGGCCTGGATATCGCGCTTGGTATTGGCGGCCTGCCTAAGGGCCGTGTCATCGAAGTTTACGGTCCGGAAAGTTCA
GGCAAAACCACGCTGGCACTCCATGTTCTTGCAGAAGCGCAGAAGAATGGCGGTACTGTCGCCTTTGTCGACGCCGAGCA
TGCGCTGGATCCGGTTTATGCCAAGGCTTTAGGTGTAGATATTGACGAACTTATTATTTCTCAGCCGGACACCGGTGAGC
AGGCACTTGAGATCACCGATACGCTGGTTCGCTCGAACGCGATCGACGTATTGGTGGTGGACTCGGTGGCCGCTTTGGTG
CCGCGCGCTGAGATCGAAGGCGAAATGGGCGACACCCACGTCGGCTTGCAGGCGCGCCTAATGTCGCAGTCCCTGCGCAA
GCTTACTGGTTCGATTAACCGTTCGAAATGCATGGTGATCTTTATCAACCAGCTTCGCATGAAGATCGGTGTGATGTATG
GTAACCCTGAAACCACAACTGGCGGCAATGCGCTGAAGTTTTACGCATCGGTTCGCCTGGACATTCGCCGCACAGGTCAG
ATCAAGGATCGCGATGAAGTGGTTGGCAACACCACCCGCGTAAAAGTAGTCAAAAACAAGGTTGCACCTCCATTCAAACA
GGTCGAGTTCGACATCATGTATGGAGAAGGGATCTCCAAGATTGGTGAGATTCTCGATCTTGGTGTGAAGGCCGGTATAG
TCGAGAAGTCAGGTAGCTGGTTCTCCTATGACAGTATCCGGATCGGTCAGGGCCGTGAGAACGCCAAGACCTATCTGAAG
GAGAACCCGGAAATTTGCGACAAGTTGGAAGCTGCTATTCGCGGCCGCACCGACGAAGTCGCCGGGGAAATGATGGCAGG
GCCTGACGCGGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

67.347

97.443

0.656
  recA Neisseria gonorrhoeae strain FA1090

67.347

97.443

0.656
  recA Neisseria gonorrhoeae MS11

67.347

97.443

0.656
  recA Pseudomonas stutzeri DSM 10701

68.546

95.739

0.656
  recA Glaesserella parasuis strain SC1401

69.277

94.318

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.463

95.17

0.642
  recA Vibrio cholerae strain A1552

67.463

95.17

0.642
  recA Bacillus subtilis subsp. subtilis str. 168

68.125

90.909

0.619
  recA Acinetobacter baylyi ADP1

64.776

95.17

0.616
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.951

92.614

0.611
  recA Ralstonia pseudosolanacearum GMI1000

69.481

87.5

0.608
  recA Helicobacter pylori 26695

63.127

96.307

0.608
  recA Acinetobacter baumannii D1279779

66.875

90.909

0.608
  recA Helicobacter pylori strain NCTC11637

62.832

96.307

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.044

91.193

0.602
  recA Streptococcus pneumoniae R6

60.399

99.716

0.602
  recA Streptococcus pneumoniae Rx1

60.399

99.716

0.602
  recA Streptococcus pneumoniae D39

60.399

99.716

0.602
  recA Streptococcus pneumoniae TIGR4

60.399

99.716

0.602
  recA Streptococcus mitis NCTC 12261

60.694

98.295

0.597
  recA Streptococcus mitis SK321

60.116

98.295

0.591
  recA Streptococcus pyogenes NZ131

60.704

96.875

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

64.062

90.909

0.582
  recA Streptococcus mutans UA159

59.531

96.875

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

92.33

0.568
  recA Lactococcus lactis subsp. cremoris KW2

59.226

95.455

0.565