Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DBT39_RS03105 Genome accession   NZ_CP127213
Coordinates   696048..697163 (+) Length   371 a.a.
NCBI ID   WP_064292334.1    Uniprot ID   A0A178HGW8
Organism   Aerococcus loyolae strain UMB0509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 691048..702163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBT39_RS03090 (DBT39_03095) - 691345..693699 (+) 2355 WP_064292330.1 DNA translocase FtsK -
  DBT39_RS03095 (DBT39_03100) pgsA 694098..694676 (+) 579 WP_064292332.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DBT39_RS03100 (DBT39_03105) - 694728..695966 (+) 1239 WP_064292333.1 competence/damage-inducible protein A -
  DBT39_RS03105 (DBT39_03110) recA 696048..697163 (+) 1116 WP_064292334.1 recombinase RecA Machinery gene
  DBT39_RS03110 (DBT39_03115) rny 697448..699019 (+) 1572 WP_064292335.1 ribonuclease Y -
  DBT39_RS03115 (DBT39_03120) - 699303..700946 (+) 1644 WP_064292336.1 G5 domain-containing protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40059.84 Da        Isoelectric Point: 4.3310

>NTDB_id=842684 DBT39_RS03105 WP_064292334.1 696048..697163(+) (recA) [Aerococcus loyolae strain UMB0509]
MSTSHDANRQKALDQALKQIEKNFGKGAIMKMGESTDTQVSTVPSGSLSLDIALGVGGYPRGRIIEVYGPESSGKTTVAL
HAVAEVQKQGGIAAFIDAENALDPEYARALGVDIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIEG
EMGDSHVGLQARLMSQALRKLSGSINKTKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRGERIKSGQDI
IGNRTKIKVVKNKVAPPFKVAEVDIMYGQGISQAGELVDLAADMDIIKKSGSWYSYGDDRIGQGRENAKLYLTENPDIFK
EIDSKVRAEYGFGPAVEDDDLEDEAADEETKNDSASDEENETLDLFNDDEE

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=842684 DBT39_RS03105 WP_064292334.1 696048..697163(+) (recA) [Aerococcus loyolae strain UMB0509]
ATGAGTACATCACATGATGCAAACCGCCAAAAGGCTTTAGATCAGGCCCTTAAACAAATTGAAAAAAACTTCGGCAAGGG
AGCTATAATGAAGATGGGAGAATCAACGGATACACAGGTGTCGACTGTTCCGTCAGGCTCCTTATCCTTAGATATCGCTC
TAGGAGTCGGAGGTTATCCGCGTGGACGAATTATTGAAGTCTACGGCCCAGAATCTTCCGGGAAAACTACTGTTGCTTTA
CATGCTGTTGCCGAGGTTCAAAAACAAGGTGGTATCGCTGCCTTTATTGATGCTGAGAACGCCTTAGACCCTGAATACGC
TAGAGCTTTGGGGGTTGACATTGATGAGCTATTACTCTCCCAACCGGATACTGGTGAACAAGGGCTAGAAATTGCAGATG
CCTTAGTGTCTTCTGGTGCGATTGATATTGTCGTTGTCGATTCTGTTGCTGCCTTAGTTCCACGGGCTGAAATTGAAGGT
GAGATGGGGGACTCCCACGTGGGCCTTCAAGCCCGTTTGATGTCTCAAGCCCTACGGAAGTTATCGGGCTCCATTAATAA
GACGAAAACCATTGCCATGTTTATTAACCAGATCCGTGAAAAAGTCGGTGTCATGTTTGGTAACCCAGAAACCACCCCAG
GGGGACGGGCCCTAAAATTTTATTCCACTATCCGTCTAGAAGTGAGACGCGGTGAACGGATCAAATCCGGTCAGGATATT
ATTGGTAACCGCACCAAGATTAAAGTGGTAAAAAATAAGGTAGCTCCGCCATTTAAGGTTGCTGAAGTGGACATTATGTA
TGGCCAAGGAATTTCTCAAGCAGGTGAATTAGTCGATTTAGCTGCTGACATGGATATCATTAAGAAGAGTGGTTCTTGGT
ATTCTTACGGGGATGACCGGATTGGCCAAGGACGCGAGAATGCCAAACTATATCTCACCGAAAATCCTGACATATTTAAG
GAAATTGATAGTAAGGTTCGGGCAGAGTATGGCTTTGGACCAGCTGTTGAAGATGATGATTTAGAAGATGAAGCCGCCGA
TGAAGAGACCAAAAATGATTCAGCAAGTGATGAAGAAAATGAAACCCTAGATTTATTTAATGATGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A178HGW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.873

89.218

0.73
  recA Bacillus subtilis subsp. subtilis str. 168

77.914

87.871

0.685
  recA Streptococcus mitis NCTC 12261

67.209

99.461

0.668
  recA Streptococcus pneumoniae Rx1

67.945

98.383

0.668
  recA Streptococcus pneumoniae D39

67.945

98.383

0.668
  recA Streptococcus pneumoniae R6

67.945

98.383

0.668
  recA Streptococcus pneumoniae TIGR4

67.945

98.383

0.668
  recA Streptococcus mitis SK321

66.938

99.461

0.666
  recA Streptococcus mutans UA159

67.867

97.305

0.66
  recA Streptococcus pyogenes NZ131

72.783

88.14

0.642
  recA Lactococcus lactis subsp. cremoris KW2

69.345

90.566

0.628
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.848

88.949

0.577
  recA Acinetobacter baylyi ADP1

59.003

97.305

0.574
  recA Neisseria gonorrhoeae strain FA1090

65.538

87.601

0.574
  recA Neisseria gonorrhoeae MS11

65.538

87.601

0.574
  recA Neisseria gonorrhoeae MS11

65.538

87.601

0.574
  recA Acinetobacter baumannii D1279779

61.29

91.914

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

89.757

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

86.792

0.544
  recA Vibrio cholerae strain A1552

62.733

86.792

0.544
  recA Ralstonia pseudosolanacearum GMI1000

62.857

84.906

0.534
  recA Glaesserella parasuis strain SC1401

60.429

87.871

0.531
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.31

92.183

0.528
  recA Pseudomonas stutzeri DSM 10701

59.259

87.332

0.518
  recA Helicobacter pylori strain NCTC11637

58.41

88.14

0.515
  recA Helicobacter pylori 26695

58.41

88.14

0.515