Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   COW1_RS00710 Genome accession   NZ_AP024239
Coordinates   155128..156177 (+) Length   349 a.a.
NCBI ID   WP_096366854.1    Uniprot ID   A0A1Z4VTY3
Organism   Thiohalobacter sp. COW1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 150128..161177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COW1_RS00675 (TspCOW1_01340) - 150393..151349 (-) 957 WP_201345089.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  COW1_RS00680 (TspCOW1_01350) - 151339..151920 (-) 582 WP_201345090.1 hypothetical protein -
  COW1_RS00685 (TspCOW1_01360) - 152109..152435 (-) 327 WP_201345091.1 type II toxin-antitoxin system RelE/ParE family toxin -
  COW1_RS00690 (TspCOW1_01370) - 152432..152713 (-) 282 WP_201345092.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  COW1_RS00695 (TspCOW1_01380) - 153232..153534 (+) 303 WP_201345093.1 PilZ domain-containing protein -
  COW1_RS00700 (TspCOW1_01390) - 153748..154263 (+) 516 WP_201345094.1 CinA family protein -
  COW1_RS00705 (TspCOW1_01400) thpR 154229..154780 (+) 552 WP_096366855.1 RNA 2',3'-cyclic phosphodiesterase -
  COW1_RS00710 (TspCOW1_01410) recA 155128..156177 (+) 1050 WP_096366854.1 recombinase RecA Machinery gene
  COW1_RS00715 (TspCOW1_01420) - 156363..156854 (+) 492 WP_242466465.1 regulatory protein RecX -
  COW1_RS00720 (TspCOW1_01430) alaS 157044..159686 (+) 2643 WP_201345095.1 alanine--tRNA ligase -
  COW1_RS00725 (TspCOW1_01440) - 159893..161122 (+) 1230 WP_201345096.1 aspartate kinase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37469.73 Da        Isoelectric Point: 4.8134

>NTDB_id=84235 COW1_RS00710 WP_096366854.1 155128..156177(+) (recA) [Thiohalobacter sp. COW1]
MDDNKRKALSAALNQIEKQFGKGAVMRMGDVGAVRDVEAISTGSLGLDVALGIGGLPAGRVVEIYGPESSGKTTLTLQAI
AECQKTGGTAAFVDAEHALDPTYAEKLGVNVDDLLVSQPDTGEQALEIADMLVRSGAVDVVVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTGNIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEIVGN
QTRVKVVKNKMAPPFKQVEFEILYGEGISREGEIIDMGVAEGLVEKSGAWYSYQGERIGQGKENVRNFLKENPDIANDID
QQLRARLLVKPKSSAEEAMDEAPEPEALN

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=84235 COW1_RS00710 WP_096366854.1 155128..156177(+) (recA) [Thiohalobacter sp. COW1]
ATGGACGACAACAAGCGCAAGGCCCTGAGTGCCGCTCTCAACCAGATCGAAAAACAGTTCGGCAAGGGTGCCGTGATGCG
GATGGGCGACGTCGGCGCCGTGCGCGATGTCGAGGCCATCTCCACCGGCTCGCTGGGACTGGACGTGGCCCTGGGCATCG
GCGGCCTGCCCGCCGGCCGCGTGGTCGAGATCTACGGGCCGGAATCCTCCGGCAAGACCACGCTCACCCTGCAGGCGATC
GCCGAATGCCAGAAGACCGGCGGCACCGCCGCCTTCGTCGACGCCGAGCATGCGCTGGATCCCACCTATGCCGAAAAGCT
GGGCGTGAACGTCGACGACCTGCTGGTCTCCCAGCCCGACACCGGCGAACAGGCGCTGGAGATCGCCGACATGCTGGTGC
GCTCCGGCGCCGTGGACGTGGTGGTGGTCGACTCGGTCGCCGCGCTCACCCCCAAGGCCGAGATCGAGGGCGAGATGGGC
GACTCCCACGTCGGCCTGCAGGCGCGCCTGATGTCCCAGGCCCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACAC
CCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAATCCCGAGACCACCACCGGCGGCAACG
CCCTCAAGTTCTACTCCTCGGTGCGCCTGGACATCCGCCGCATCGGTGCCATCAAGAAGGGCGACGAGATCGTCGGCAAC
CAGACCCGCGTCAAGGTGGTCAAGAACAAGATGGCCCCGCCCTTCAAGCAGGTCGAGTTCGAGATCCTTTACGGCGAGGG
CATCTCGCGCGAGGGCGAGATCATCGACATGGGCGTGGCCGAGGGCCTGGTCGAGAAGTCCGGCGCCTGGTACTCCTACC
AGGGCGAACGCATCGGCCAGGGCAAGGAGAACGTGCGCAACTTCCTCAAGGAAAACCCGGACATCGCCAACGACATCGAT
CAGCAGCTGCGGGCCAGACTGCTGGTCAAGCCCAAGTCCAGTGCCGAGGAGGCCATGGACGAGGCGCCCGAGCCGGAGGC
GCTGAACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z4VTY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.116

94.269

0.736
  recA Acinetobacter baumannii D1279779

72.414

99.713

0.722
  recA Acinetobacter baylyi ADP1

72.543

99.14

0.719
  recA Ralstonia pseudosolanacearum GMI1000

73.235

97.421

0.713
  recA Vibrio cholerae strain A1552

74.39

93.983

0.699
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.39

93.983

0.699
  recA Neisseria gonorrhoeae MS11

74.462

93.123

0.693
  recA Neisseria gonorrhoeae MS11

74.462

93.123

0.693
  recA Neisseria gonorrhoeae strain FA1090

74.462

93.123

0.693
  recA Glaesserella parasuis strain SC1401

68.605

98.567

0.676
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.385

96.848

0.633
  recA Helicobacter pylori strain NCTC11637

63.006

99.14

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

67.601

91.977

0.622
  recA Helicobacter pylori 26695

62.428

99.14

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

95.702

0.607
  recA Streptococcus mutans UA159

61.357

97.135

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

64.396

92.55

0.596
  recA Streptococcus pneumoniae Rx1

58.475

100

0.593
  recA Streptococcus pneumoniae D39

58.475

100

0.593
  recA Streptococcus pneumoniae R6

58.475

100

0.593
  recA Streptococcus pneumoniae TIGR4

58.475

100

0.593
  recA Streptococcus mitis NCTC 12261

58.857

100

0.59
  recA Streptococcus mitis SK321

58.286

100

0.585
  recA Streptococcus pyogenes NZ131

60.79

94.269

0.573
  recA Lactococcus lactis subsp. cremoris KW2

60.308

93.123

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.385

93.123

0.553

Multiple sequence alignment