Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LDN84_RS21010 Genome accession   NZ_AP024238
Coordinates   4555034..4556116 (-) Length   360 a.a.
NCBI ID   WP_223905601.1    Uniprot ID   -
Organism   Rhodoferax lithotrophicus strain MIZ03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4550034..4561116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN84_RS20985 (MIZ03_4425) - 4550611..4551207 (+) 597 WP_223905588.1 DUF2846 domain-containing protein -
  LDN84_RS20990 (MIZ03_4426) - 4551318..4552229 (+) 912 WP_223905590.1 LysR family transcriptional regulator -
  LDN84_RS20995 (MIZ03_4427) - 4552235..4552759 (-) 525 WP_223905592.1 acyl-CoA thioesterase -
  LDN84_RS21000 (MIZ03_4429) - 4552990..4554195 (-) 1206 WP_223905595.1 transglutaminase domain-containing protein -
  LDN84_RS21005 (MIZ03_4430) recX 4554484..4554960 (-) 477 WP_223905598.1 recombination regulator RecX -
  LDN84_RS21010 (MIZ03_4431) recA 4555034..4556116 (-) 1083 WP_223905601.1 recombinase RecA Machinery gene
  LDN84_RS21015 (MIZ03_4432) - 4556272..4556745 (+) 474 WP_223905603.1 MarR family transcriptional regulator -
  LDN84_RS21020 (MIZ03_4433) - 4556808..4557482 (+) 675 WP_223905606.1 response regulator transcription factor -
  LDN84_RS21025 (MIZ03_4434) - 4557558..4558958 (+) 1401 WP_223913225.1 sensor histidine kinase -
  LDN84_RS21030 (MIZ03_4435) - 4558949..4559632 (-) 684 WP_223905608.1 SPOR domain-containing protein -
  LDN84_RS21035 (MIZ03_4436) - 4559645..4560454 (-) 810 WP_223905610.1 biotin--[acetyl-CoA-carboxylase] ligase -
  LDN84_RS21040 (MIZ03_4437) - 4560459..4560929 (-) 471 WP_223913227.1 SET domain-containing protein-lysine N-methyltransferase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38518.32 Da        Isoelectric Point: 5.5915

>NTDB_id=84230 LDN84_RS21010 WP_223905601.1 4555034..4556116(-) (recA) [Rhodoferax lithotrophicus strain MIZ03]
MEAPVKAPTPVNAEKAKALQVALAQIEKQFGKGTIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKTGGQCAFVDAEHALDIQYAQNLGVNLQDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALT
PKAELEGEMGDSLPGLQARLMSQALRKLTAHIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGT
IKKGDESIGNETKVKVVKNKVSPPFKTAEFDIMFGQGISREGEIIDMGVNANILDKSGAWYAYNGEKIGQGRDNAREFLK
ENPELSREIENKVRASLGIPLLAGTESPEAVSKVASKKAV

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=84230 LDN84_RS21010 WP_223905601.1 4555034..4556116(-) (recA) [Rhodoferax lithotrophicus strain MIZ03]
ATGGAAGCACCCGTCAAGGCCCCCACTCCCGTCAACGCTGAAAAAGCCAAAGCCCTGCAAGTGGCGCTGGCGCAAATTGA
AAAGCAATTCGGCAAGGGCACCATCATGCGTCTGGGAGAAGGCGAGGTGATTGAAGACATCCAGGTGGTGTCCACCGGTT
CGCTCGGGCTGGATATTGCACTTGGTGTCGGCGGCCTGCCGCGTGGCCGGGTGGTGGAAATTTATGGCCCGGAATCTTCT
GGTAAAACCACGCTGACCCTGCAAGTGATCGCCGAAATGCAAAAAACCGGCGGCCAATGCGCGTTTGTGGATGCCGAGCA
CGCACTGGACATCCAGTACGCGCAAAACCTCGGTGTCAACCTGCAAGACCTGCTGATCAGCCAGCCTGACACCGGTGAGC
AGGCGCTGGAGATTGTCGACAGCCTGGTGCGCTCCGGCGCGGTCGATTTGATTGTGGTGGACTCGGTGGCGGCCTTGACC
CCCAAAGCCGAACTCGAAGGTGAAATGGGCGACAGCCTGCCAGGCTTGCAAGCCCGCCTGATGAGCCAGGCACTGCGCAA
ACTCACCGCCCACATCAAAAAGACCAACTGTATGGTGATCTTCATCAATCAGATCCGCATGAAGATTGGTGTGATGTTTG
GCAGCCCCGAGACCACCACCGGTGGCAATGCGCTCAAGTTTTATGCTTCGGTGCGTCTGGACATCCGCCGCACCGGCACC
ATCAAGAAGGGCGACGAATCGATTGGCAATGAAACCAAAGTCAAAGTGGTTAAAAACAAGGTGTCACCCCCGTTCAAAAC
CGCAGAGTTTGACATCATGTTTGGTCAAGGCATCAGCCGCGAAGGCGAGATCATCGACATGGGGGTGAACGCCAATATCC
TGGACAAGTCCGGTGCCTGGTACGCCTACAACGGCGAGAAAATTGGCCAGGGTCGTGACAACGCCCGCGAGTTTTTGAAA
GAGAACCCGGAGCTTTCCCGTGAAATTGAAAACAAGGTACGGGCCTCGCTGGGTATTCCGCTGCTGGCAGGGACAGAGTC
GCCTGAAGCTGTCAGCAAGGTTGCAAGCAAAAAGGCAGTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

78.551

95.833

0.753
  recA Neisseria gonorrhoeae MS11

71.951

91.111

0.656
  recA Neisseria gonorrhoeae MS11

71.951

91.111

0.656
  recA Neisseria gonorrhoeae strain FA1090

71.951

91.111

0.656
  recA Pseudomonas stutzeri DSM 10701

71.56

90.833

0.65
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.035

94.722

0.644
  recA Vibrio cholerae strain A1552

68.035

94.722

0.644
  recA Acinetobacter baylyi ADP1

71.517

89.722

0.642
  recA Glaesserella parasuis strain SC1401

71.296

90

0.642
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.569

94.722

0.631
  recA Acinetobacter baumannii D1279779

69.113

90.833

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.467

92.778

0.617
  recA Helicobacter pylori 26695

64.742

91.389

0.592
  recA Helicobacter pylori strain NCTC11637

64.742

91.389

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

90.833

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

63.497

90.556

0.575
  recA Streptococcus pneumoniae TIGR4

60.411

94.722

0.572
  recA Streptococcus pneumoniae D39

60.411

94.722

0.572
  recA Streptococcus pneumoniae Rx1

60.411

94.722

0.572
  recA Streptococcus pneumoniae R6

60.411

94.722

0.572
  recA Lactococcus lactis subsp. cremoris KW2

62.236

91.944

0.572
  recA Streptococcus mitis SK321

59.942

95

0.569
  recA Streptococcus mitis NCTC 12261

59.942

95

0.569
  recA Streptococcus pyogenes NZ131

62.006

91.389

0.567
  recA Streptococcus mutans UA159

61.212

91.667

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.281

92.778

0.55

Multiple sequence alignment