Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OJF58_RS22160 | Genome accession | NZ_CP126889 |
| Coordinates | 4448782..4449852 (+) | Length | 356 a.a. |
| NCBI ID | WP_300779946.1 | Uniprot ID | - |
| Organism | MAG: Enhydrobacter sp. isolate bin_2004 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4427190..4474889 | 4448782..4449852 | within | 0 |
Gene organization within MGE regions
Location: 4427190..4474889
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OJF58_RS22065 (OJF58_004478) | gdhA | 4427418..4428761 (+) | 1344 | WP_300779924.1 | NADP-specific glutamate dehydrogenase | - |
| OJF58_RS22070 (OJF58_004479) | - | 4428904..4430697 (-) | 1794 | WP_300779925.1 | hypothetical protein | - |
| OJF58_RS22075 (OJF58_004480) | - | 4430853..4431932 (-) | 1080 | WP_300779365.1 | IS630 family transposase | - |
| OJF58_RS22080 (OJF58_004481) | - | 4432001..4432789 (-) | 789 | WP_300779926.1 | alpha/beta hydrolase | - |
| OJF58_RS22085 (OJF58_004482) | - | 4432862..4434028 (-) | 1167 | WP_300779929.1 | ATP phosphoribosyltransferase regulatory subunit | - |
| OJF58_RS22090 (OJF58_004483) | - | 4434136..4435728 (+) | 1593 | WP_300779930.1 | glycosyltransferase family 39 protein | - |
| OJF58_RS22095 (OJF58_004484) | - | 4435725..4436684 (+) | 960 | WP_300779931.1 | glycosyltransferase family 2 protein | - |
| OJF58_RS22100 (OJF58_004485) | - | 4436681..4437394 (+) | 714 | WP_300779932.1 | class I SAM-dependent methyltransferase | - |
| OJF58_RS22105 (OJF58_004486) | - | 4437394..4439073 (+) | 1680 | WP_300779933.1 | hypothetical protein | - |
| OJF58_RS22110 (OJF58_004487) | - | 4439070..4440149 (-) | 1080 | WP_300779365.1 | IS630 family transposase | - |
| OJF58_RS22115 (OJF58_004488) | - | 4440218..4440397 (-) | 180 | WP_300779934.1 | hypothetical protein | - |
| OJF58_RS22120 (OJF58_004489) | - | 4440592..4441758 (+) | 1167 | WP_300779936.1 | phosphoserine transaminase | - |
| OJF58_RS22125 (OJF58_004490) | serA | 4441846..4443429 (+) | 1584 | WP_300779938.1 | phosphoglycerate dehydrogenase | - |
| OJF58_RS22130 (OJF58_004491) | - | 4443535..4443777 (+) | 243 | WP_300779940.1 | hypothetical protein | - |
| OJF58_RS22135 (OJF58_004492) | - | 4443829..4444092 (+) | 264 | WP_300779941.1 | hypothetical protein | - |
| OJF58_RS22140 (OJF58_004493) | - | 4444114..4445091 (-) | 978 | WP_300779942.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| OJF58_RS22145 (OJF58_004494) | tcuA | 4445114..4446604 (-) | 1491 | WP_300779943.1 | FAD-dependent tricarballylate dehydrogenase TcuA | - |
| OJF58_RS22150 (OJF58_004495) | - | 4446666..4447304 (+) | 639 | WP_300779944.1 | hypothetical protein | - |
| OJF58_RS22155 (OJF58_004496) | - | 4447363..4448547 (+) | 1185 | WP_300779945.1 | CaiB/BaiF CoA-transferase family protein | - |
| OJF58_RS22160 (OJF58_004497) | recA | 4448782..4449852 (+) | 1071 | WP_300779946.1 | recombinase RecA | Machinery gene |
| OJF58_RS22165 (OJF58_004498) | - | 4450137..4452314 (+) | 2178 | WP_300779947.1 | PQQ-dependent dehydrogenase, methanol/ethanol family | - |
| OJF58_RS22170 (OJF58_004499) | - | 4452321..4453049 (-) | 729 | WP_300779949.1 | YkgJ family cysteine cluster protein | - |
| OJF58_RS22175 (OJF58_004500) | alaS | 4453110..4455767 (+) | 2658 | WP_300779950.1 | alanine--tRNA ligase | - |
| OJF58_RS22180 (OJF58_004501) | - | 4455764..4456108 (+) | 345 | WP_300779952.1 | hypothetical protein | - |
| OJF58_RS22185 (OJF58_004502) | - | 4456150..4456329 (-) | 180 | WP_300779953.1 | hypothetical protein | - |
| OJF58_RS22190 (OJF58_004503) | - | 4456484..4456921 (+) | 438 | WP_300779955.1 | hypothetical protein | - |
| OJF58_RS22195 (OJF58_004504) | - | 4456926..4457285 (-) | 360 | WP_300779956.1 | hypothetical protein | - |
| OJF58_RS22200 (OJF58_004505) | - | 4457327..4460821 (-) | 3495 | WP_300779958.1 | indolepyruvate ferredoxin oxidoreductase family protein | - |
| OJF58_RS22205 (OJF58_004507) | - | 4461044..4462012 (+) | 969 | WP_300779959.1 | NAD-dependent epimerase/dehydratase family protein | - |
| OJF58_RS22210 (OJF58_004508) | - | 4462102..4462869 (+) | 768 | WP_300779960.1 | ABC transporter ATP-binding protein | - |
| OJF58_RS22215 (OJF58_004509) | - | 4462866..4463618 (+) | 753 | WP_300779961.1 | ABC transporter ATP-binding protein | - |
| OJF58_RS22220 (OJF58_004510) | - | 4463615..4464811 (+) | 1197 | WP_300779962.1 | ABC transporter substrate-binding protein | - |
| OJF58_RS22225 (OJF58_004511) | - | 4464898..4465758 (+) | 861 | WP_300779963.1 | branched-chain amino acid ABC transporter permease | - |
| OJF58_RS22230 (OJF58_004512) | - | 4465761..4466678 (+) | 918 | WP_300779964.1 | branched-chain amino acid ABC transporter permease | - |
| OJF58_RS22235 (OJF58_004513) | - | 4466675..4467163 (+) | 489 | WP_300779965.1 | GAF domain-containing protein | - |
| OJF58_RS22240 (OJF58_004514) | - | 4467160..4467693 (+) | 534 | WP_300779968.1 | AAA family ATPase | - |
| OJF58_RS22245 (OJF58_004515) | - | 4467748..4469517 (+) | 1770 | WP_300779969.1 | M3 family oligoendopeptidase | - |
| OJF58_RS22250 (OJF58_004516) | - | 4469520..4470854 (+) | 1335 | WP_300779971.1 | AarF/ABC1/UbiB kinase family protein | - |
| OJF58_RS22255 (OJF58_004517) | - | 4470851..4471813 (+) | 963 | WP_300779972.1 | NAD(P)-dependent oxidoreductase | - |
| OJF58_RS22260 (OJF58_004518) | - | 4471788..4473413 (-) | 1626 | WP_300779974.1 | thiamine pyrophosphate-dependent enzyme | - |
| OJF58_RS22265 (OJF58_004519) | - | 4473407..4474174 (+) | 768 | WP_300779975.1 | ElyC/SanA/YdcF family protein | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 37859.42 Da Isoelectric Point: 4.9884
>NTDB_id=840404 OJF58_RS22160 WP_300779946.1 4448782..4449852(+) (recA) [MAG: Enhydrobacter sp. isolate bin_2004]
MSAALKLVEKEGMENKNKALDAALAQIERAFGKGSIMKLGQREALEIEAVSTGSLGLDIALGIGGLPKGRIVEIYGPESS
GKTTLALHCVAEAQKKGGACAFIDAEHALDPVYAKKLGVDIDNLLISQPDAGEQALEIADTLVRSGAIDVLVIDSVAALV
PRAELEGEMGDALPGLQARLMSQALRKLTASISKSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGA
LKDRDEVVGNATRVKVVKNKVAPPFKVVEFDIMYGEGVSKVGELIDLGEKAGVVEKSGSWFSYDGQRIGQGRENAKNYLK
EHPEVAQAIEQKVRANAGIVADALMDGGKSDEDEDD
MSAALKLVEKEGMENKNKALDAALAQIERAFGKGSIMKLGQREALEIEAVSTGSLGLDIALGIGGLPKGRIVEIYGPESS
GKTTLALHCVAEAQKKGGACAFIDAEHALDPVYAKKLGVDIDNLLISQPDAGEQALEIADTLVRSGAIDVLVIDSVAALV
PRAELEGEMGDALPGLQARLMSQALRKLTASISKSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGA
LKDRDEVVGNATRVKVVKNKVAPPFKVVEFDIMYGEGVSKVGELIDLGEKAGVVEKSGSWFSYDGQRIGQGRENAKNYLK
EHPEVAQAIEQKVRANAGIVADALMDGGKSDEDEDD
Nucleotide
Download Length: 1071 bp
>NTDB_id=840404 OJF58_RS22160 WP_300779946.1 4448782..4449852(+) (recA) [MAG: Enhydrobacter sp. isolate bin_2004]
ATGTCGGCAGCGCTGAAACTGGTCGAGAAAGAGGGCATGGAGAACAAGAACAAGGCGCTCGATGCAGCCTTGGCGCAGAT
CGAACGCGCCTTCGGCAAGGGGTCGATCATGAAGCTCGGCCAGCGCGAGGCGCTGGAGATCGAGGCGGTGTCGACCGGCT
CGCTGGGCCTCGATATCGCGCTGGGGATCGGCGGCCTGCCCAAGGGGCGCATCGTCGAGATCTACGGCCCCGAAAGCTCG
GGAAAGACGACGCTGGCGCTGCATTGCGTGGCCGAAGCCCAGAAGAAGGGCGGCGCCTGCGCCTTCATCGATGCCGAGCA
TGCGCTCGACCCGGTCTATGCCAAGAAGCTCGGTGTCGATATCGACAATCTGCTGATTTCCCAGCCCGACGCGGGCGAGC
AGGCGCTCGAGATCGCCGACACGCTGGTCCGCTCCGGCGCCATCGACGTGCTGGTGATCGACTCGGTCGCCGCCCTCGTG
CCGCGGGCCGAGCTCGAGGGCGAGATGGGCGATGCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAA
GCTCACGGCCTCGATCTCCAAGTCGAACACGCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCAGCCCCGAGACCACGACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGCATCGGCGCG
CTCAAGGACAGGGACGAGGTGGTCGGCAACGCCACGCGGGTGAAGGTGGTGAAGAACAAGGTGGCGCCGCCGTTCAAGGT
CGTCGAGTTCGACATCATGTACGGCGAAGGCGTGAGCAAGGTCGGCGAGCTGATCGATCTCGGCGAGAAGGCGGGGGTGG
TCGAGAAGTCGGGCTCGTGGTTCTCCTACGACGGCCAGCGCATCGGGCAGGGCCGCGAGAACGCCAAGAATTACCTCAAG
GAGCATCCCGAGGTCGCCCAGGCGATCGAGCAGAAAGTCCGGGCCAATGCCGGCATCGTCGCCGATGCGCTGATGGACGG
CGGCAAGAGCGACGAGGACGAGGACGACTAG
ATGTCGGCAGCGCTGAAACTGGTCGAGAAAGAGGGCATGGAGAACAAGAACAAGGCGCTCGATGCAGCCTTGGCGCAGAT
CGAACGCGCCTTCGGCAAGGGGTCGATCATGAAGCTCGGCCAGCGCGAGGCGCTGGAGATCGAGGCGGTGTCGACCGGCT
CGCTGGGCCTCGATATCGCGCTGGGGATCGGCGGCCTGCCCAAGGGGCGCATCGTCGAGATCTACGGCCCCGAAAGCTCG
GGAAAGACGACGCTGGCGCTGCATTGCGTGGCCGAAGCCCAGAAGAAGGGCGGCGCCTGCGCCTTCATCGATGCCGAGCA
TGCGCTCGACCCGGTCTATGCCAAGAAGCTCGGTGTCGATATCGACAATCTGCTGATTTCCCAGCCCGACGCGGGCGAGC
AGGCGCTCGAGATCGCCGACACGCTGGTCCGCTCCGGCGCCATCGACGTGCTGGTGATCGACTCGGTCGCCGCCCTCGTG
CCGCGGGCCGAGCTCGAGGGCGAGATGGGCGATGCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAA
GCTCACGGCCTCGATCTCCAAGTCGAACACGCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCAGCCCCGAGACCACGACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGCATCGGCGCG
CTCAAGGACAGGGACGAGGTGGTCGGCAACGCCACGCGGGTGAAGGTGGTGAAGAACAAGGTGGCGCCGCCGTTCAAGGT
CGTCGAGTTCGACATCATGTACGGCGAAGGCGTGAGCAAGGTCGGCGAGCTGATCGATCTCGGCGAGAAGGCGGGGGTGG
TCGAGAAGTCGGGCTCGTGGTTCTCCTACGACGGCCAGCGCATCGGGCAGGGCCGCGAGAACGCCAAGAATTACCTCAAG
GAGCATCCCGAGGTCGCCCAGGCGATCGAGCAGAAAGTCCGGGCCAATGCCGGCATCGTCGCCGATGCGCTGATGGACGG
CGGCAAGAGCGACGAGGACGAGGACGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.