Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JN167_RS05900 Genome accession   NZ_AP024201
Coordinates   1255244..1256287 (+) Length   347 a.a.
NCBI ID   WP_000368169.1    Uniprot ID   A0A7U7JU93
Organism   Staphylococcus argenteus strain Tokyo13069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1250244..1261287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN167_RS05875 (TMSFP069_11410) ymfI 1251019..1251723 (+) 705 WP_000646238.1 elongation factor P 5-aminopentanone reductase -
  JN167_RS05880 (TMSFP069_11420) - 1251831..1252658 (+) 828 WP_031786956.1 DUF3388 domain-containing protein -
  JN167_RS05885 (TMSFP069_11430) - 1252683..1253075 (+) 393 WP_000859442.1 helix-turn-helix domain-containing protein -
  JN167_RS05890 (TMSFP069_11440) pgsA 1253107..1253685 (+) 579 WP_001025088.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JN167_RS05895 (TMSFP069_11450) - 1253928..1255079 (+) 1152 WP_047526469.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  JN167_RS05900 (TMSFP069_11460) recA 1255244..1256287 (+) 1044 WP_000368169.1 recombinase RecA Machinery gene
  JN167_RS05905 - 1256469..1256614 (-) 146 Protein_1159 transposase -
  JN167_RS05910 (TMSFP069_11470) rny 1256900..1258459 (+) 1560 WP_001050920.1 ribonuclease Y -
  JN167_RS05915 (TMSFP069_11480) - 1258674..1258889 (-) 216 WP_000026306.1 hypothetical protein -
  JN167_RS05920 (TMSFP069_11490) - 1259063..1259854 (+) 792 WP_031786959.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37654.55 Da        Isoelectric Point: 4.8509

>NTDB_id=83965 JN167_RS05900 WP_000368169.1 1255244..1256287(+) (recA) [Staphylococcus argenteus strain Tokyo13069]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGISDGDVEEVEDAPKSLFDEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=83965 JN167_RS05900 WP_000368169.1 1255244..1256287(+) (recA) [Staphylococcus argenteus strain Tokyo13069]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTGATGAA
GTTAGGCGATAATATAGGTCGTCGAGTTTCTACAACGTCAACTGGATCAGTTACACTTGATAACGCATTAGGCGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATATATGGACCTGAAAGTTCTGGTAAGACAACAGTGGCACTTCATGCTATTGCA
GAAGTGCAAAGCAATGGTGGAGTAGCTGCATTTATCGATGCCGAACATGCATTAGATCCAGAATATGCACAAGCTCTAGG
GGTAGATATTGATAATTTATACTTATCTCAACCTGACCATGGTGAACAAGGGCTTGAAATCGCAGAAGCATTTGTTAGAA
GTGGCGCGGTTGACATCGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTCGGTTTACAAGCGCGTTTAATGTCACAAGCATTACGTAAACTATCTGGTGCTATCTCTAAATCAAATACAAC
TGCTATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAATCCGGAGACTACACCTGGTGGGCGCGCAT
TAAAATTCTATAGCTCAGTTAGATTAGAAGTTCGTCGTGCTGAACAACTTAAACAAGGTCAAGAAATCGTTGGTAATAGA
ACGAAGATTAAAGTTGTTAAAAATAAAGTAGCACCTCCATTTAGAGTGGCAGAAGTTGATATTATGTATGGTCAAGGTAT
TTCAAAAGAAGGTGAACTTATTGATTTAGGTGTTGAAAATGACATCGTTGATAAGTCTGGTGCTTGGTACTCATATAATG
GTGAAAGAATGGGCCAAGGTAAAGAAAACGTAAAAATGTACTTGAAAGAAAATCCTCAAATTAAAGAAGAAATTGATCGC
AAGTTACGAGAGAAACTTGGAATTTCTGATGGTGATGTTGAAGAAGTTGAAGACGCACCAAAATCTTTATTTGACGAAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7JU93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.435

95.389

0.729
  recA Latilactobacillus sakei subsp. sakei 23K

70.294

97.983

0.689
  recA Streptococcus pneumoniae TIGR4

64.943

100

0.651
  recA Streptococcus pneumoniae Rx1

64.943

100

0.651
  recA Streptococcus pneumoniae D39

64.943

100

0.651
  recA Streptococcus pneumoniae R6

64.943

100

0.651
  recA Streptococcus pyogenes NZ131

68.389

94.813

0.648
  recA Streptococcus mutans UA159

64

100

0.646
  recA Streptococcus mitis SK321

64.553

100

0.646
  recA Streptococcus mitis NCTC 12261

65.205

98.559

0.643
  recA Acinetobacter baylyi ADP1

63.977

100

0.64
  recA Acinetobacter baumannii D1279779

66.871

93.948

0.628
  recA Neisseria gonorrhoeae MS11

66.261

94.813

0.628
  recA Neisseria gonorrhoeae strain FA1090

66.261

94.813

0.628
  recA Neisseria gonorrhoeae MS11

66.261

94.813

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.389

0.625
  recA Helicobacter pylori strain NCTC11637

63.636

98.271

0.625
  recA Helicobacter pylori 26695

63.636

98.271

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

94.813

0.625
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.644

93.948

0.617
  recA Vibrio cholerae strain A1552

65.644

93.948

0.617
  recA Ralstonia pseudosolanacearum GMI1000

65.605

90.49

0.594
  recA Pseudomonas stutzeri DSM 10701

61.078

96.254

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.389

0.582
  recA Glaesserella parasuis strain SC1401

60.681

93.084

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.129

91.931

0.562

Multiple sequence alignment