Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QOZ81_RS02105 Genome accession   NZ_CP126625
Coordinates   489904..490962 (-) Length   352 a.a.
NCBI ID   WP_291202316.1    Uniprot ID   A0A8J8HTE1
Organism   MAG: Geothrix sp. isolate L227-G1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 484904..495962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOZ81_RS02085 (QOZ81_000419) - 485132..486118 (-) 987 WP_291202328.1 isoaspartyl peptidase/L-asparaginase -
  QOZ81_RS02090 (QOZ81_000420) moaA 486132..487136 (-) 1005 WP_291202325.1 GTP 3',8-cyclase MoaA -
  QOZ81_RS02095 (QOZ81_000421) - 487204..488430 (+) 1227 WP_291202322.1 hypothetical protein -
  QOZ81_RS02100 (QOZ81_000422) - 488457..489794 (+) 1338 WP_300715327.1 tetratricopeptide repeat-containing serine protease family protein -
  QOZ81_RS02105 (QOZ81_000423) recA 489904..490962 (-) 1059 WP_291202316.1 recombinase RecA Machinery gene
  QOZ81_RS02110 (QOZ81_000424) - 491065..493470 (+) 2406 WP_291202313.1 ATP-binding protein -
  QOZ81_RS02115 (QOZ81_000425) - 493467..494648 (+) 1182 WP_291202310.1 hypothetical protein -
  QOZ81_RS02120 (QOZ81_000426) - 494667..495794 (-) 1128 WP_291202306.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37611.12 Da        Isoelectric Point: 5.8198

>NTDB_id=839260 QOZ81_RS02105 WP_291202316.1 489904..490962(-) (recA) [MAG: Geothrix sp. isolate L227-G1]
MAASEQDDRLKALTRTVADIERAFGKGSIMKLGDRMSSAEGIEVISTGSISLDSALGVGGVPKGRVVEVYGPEASGKTTL
ALHMVAQAQKKGGLAAYIDAEHALDPEYAQKLGVDVANLFISQPDSGEQALEICDQLVRSGALDIIVIDSVAALVPKAEI
DGEMGDSHVGLQARLMSQALRKMTGTISKTHTCVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDVRSIQSIKGNT
GDPLVAAKDEDSSVIGKKTKVKVVKNKVAPPLKVATFDIMYGEGISRTSELVELGTQLEIIQKSGSWYSYKDSRLGQGAE
NVKKLFNDNPELADEVESLIRERLGMKALVEA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=839260 QOZ81_RS02105 WP_291202316.1 489904..490962(-) (recA) [MAG: Geothrix sp. isolate L227-G1]
ATGGCCGCGTCCGAGCAAGACGATCGCCTCAAAGCCCTGACCCGCACCGTCGCCGACATCGAGCGGGCCTTCGGCAAGGG
TTCGATCATGAAGCTCGGCGACCGCATGAGCAGCGCCGAGGGCATCGAAGTCATCAGCACCGGCTCCATCTCCCTGGATT
CCGCCCTGGGTGTCGGTGGCGTGCCCAAGGGCCGCGTCGTCGAAGTCTACGGACCGGAGGCCAGCGGCAAGACCACCCTG
GCCCTGCACATGGTGGCCCAGGCCCAGAAGAAGGGCGGCCTGGCCGCCTACATCGACGCCGAGCACGCCCTGGATCCCGA
GTACGCCCAGAAGCTGGGCGTGGACGTGGCCAACCTCTTCATCTCCCAGCCCGACAGCGGCGAGCAGGCCCTGGAGATCT
GCGACCAGCTGGTGCGCAGCGGCGCCCTGGACATCATCGTCATCGACTCCGTGGCCGCCCTGGTGCCCAAGGCCGAGATC
GACGGCGAGATGGGCGACAGCCACGTGGGCCTGCAGGCCCGCCTCATGAGCCAGGCCCTCCGCAAGATGACGGGCACCAT
CAGCAAGACCCACACCTGCGTGGTCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCCGAGACCA
CCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCCGTGCGCCTCGACGTCCGCAGCATCCAGAGCATCAAGGGCAACACC
GGCGATCCCCTGGTGGCCGCCAAGGACGAGGACTCCTCCGTCATCGGCAAGAAGACCAAGGTGAAGGTGGTGAAGAACAA
GGTCGCCCCGCCCCTCAAGGTCGCCACCTTCGACATCATGTACGGCGAGGGCATCAGCCGCACCAGCGAGCTGGTGGAGC
TGGGCACCCAGCTGGAGATCATCCAGAAGAGCGGTTCCTGGTACAGCTACAAGGACAGCCGCCTCGGCCAGGGCGCCGAG
AACGTGAAGAAGCTCTTCAACGACAATCCCGAACTGGCGGACGAGGTCGAAAGCCTCATTCGCGAACGCCTCGGCATGAA
AGCCCTGGTCGAAGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.081

97.727

0.616
  recA Neisseria gonorrhoeae MS11

63.582

95.17

0.605
  recA Neisseria gonorrhoeae MS11

63.582

95.17

0.605
  recA Neisseria gonorrhoeae strain FA1090

63.582

95.17

0.605
  recA Ralstonia pseudosolanacearum GMI1000

64.545

93.75

0.605
  recA Glaesserella parasuis strain SC1401

62.059

96.591

0.599
  recA Streptococcus pyogenes NZ131

61.947

96.307

0.597
  recA Streptococcus mitis NCTC 12261

61.652

96.307

0.594
  recA Streptococcus mitis SK321

61.357

96.307

0.591
  recA Streptococcus pneumoniae Rx1

61.062

96.307

0.588
  recA Streptococcus pneumoniae D39

61.062

96.307

0.588
  recA Streptococcus pneumoniae R6

61.062

96.307

0.588
  recA Streptococcus pneumoniae TIGR4

61.062

96.307

0.588
  recA Streptococcus mutans UA159

60.882

96.591

0.588
  recA Acinetobacter baylyi ADP1

60.234

97.159

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

60.767

96.307

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

58.671

98.295

0.577
  recA Acinetobacter baumannii D1279779

60.059

96.023

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.551

98.011

0.574
  recA Pseudomonas stutzeri DSM 10701

59.467

96.023

0.571
  recA Helicobacter pylori 26695

58.529

96.591

0.565
  recA Lactococcus lactis subsp. cremoris KW2

58.407

96.307

0.562
  recA Helicobacter pylori strain NCTC11637

58.235

96.591

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.284

96.023

0.56
  recA Vibrio cholerae strain A1552

58.284

96.023

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.143

97.443

0.557