Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QPK06_RS12135 Genome accession   NZ_CP126578
Coordinates   2554999..2556063 (+) Length   354 a.a.
NCBI ID   WP_005348744.1    Uniprot ID   A0A0K0MIY5
Organism   Aeromonas veronii strain AV066     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2549999..2561063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK06_RS12120 (QPK06_12120) - 2550631..2551494 (+) 864 WP_139742510.1 patatin family protein -
  QPK06_RS12125 (QPK06_12125) mutS 2551585..2554104 (-) 2520 WP_193558457.1 DNA mismatch repair protein MutS -
  QPK06_RS12130 (QPK06_12130) pncC 2554427..2554918 (+) 492 WP_139742508.1 nicotinamide-nucleotide amidase -
  QPK06_RS12135 (QPK06_12135) recA 2554999..2556063 (+) 1065 WP_005348744.1 recombinase RecA Machinery gene
  QPK06_RS12140 (QPK06_12140) - 2556108..2556617 (+) 510 WP_139742581.1 regulatory protein RecX -
  QPK06_RS12145 (QPK06_12145) alaS 2556913..2559537 (+) 2625 WP_139478422.1 alanine--tRNA ligase -
  QPK06_RS12150 (QPK06_12150) - 2559554..2560792 (+) 1239 WP_005336054.1 aspartate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37989.67 Da        Isoelectric Point: 4.8874

>NTDB_id=838931 QPK06_RS12135 WP_005348744.1 2554999..2556063(+) (recA) [Aeromonas veronii strain AV066]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKVMAGEVEA
RLRELLLSGAVPVDDKAAPVEADEFDAESEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=838931 QPK06_RS12135 WP_005348744.1 2554999..2556063(+) (recA) [Aeromonas veronii strain AV066]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATTGAAAAGCAGTTCGGCAAAGGTTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCTACCGGTTCCCTCTCGCTGGACGTGGCGCTGGGCATTGGCG
GTCTGCCGTGTGGCCGTATCGTCGAAATCTACGGCCCGGAATCTTCCGGTAAAACCACCCTCACCCTGCAGGTGATCGCG
GAAGCCCAGAAGAAAGGCAAAACCTGTGCCTTCGTCGATGCGGAACACGCCCTCGACCCTATCTACGCTGCCAAGCTGGG
CGTCAACGTCGACGACCTGCTCATCTCTCAACCGGATACCGGTGAACAGGCGCTGGAAATCTGCGACATGCTGGTGCGCT
CCAATGCGGTTGACGTCATCATCGTCGACTCCGTTGCGGCCCTGACGCCGAAAGCGGAAATCGAAGGGGAGATGGGTGAC
TCCCACGTTGGTCTGCAGGCCCGTCTGATGTCCCAGGCGCTGCGCAAGCTGACTGCCAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAAATCGGCGTCATGTTCGGTAGCCCGGAGACCACTACCGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTTCGTCTGGATATCCGTCGCATCGGCGCCATCAAGGAAGGCGACGAAGTGGTCGGTAACGAG
ACCCGTGTCAAAGTGGTCAAGAACAAGGTGGCCCCGCCCTTCAAGCAGGCTGAATTCCAGATCTTCTACGGCGCTGGCAT
CTCCAAAGAGGGCGAGCTGGTGGATCTGGGCGTCAAGCACAAGCTTATCGACAAGGCCGGTGCCTGGTACAGCTACAACG
GTGAGAAGATCGGTCAGGGCAAGGCCAACGTGATGAAGCTGTTCGCCGAGAACAAGGTGATGGCTGGCGAAGTGGAAGCC
CGCCTGCGCGAGCTGCTGCTCTCCGGCGCAGTGCCTGTCGATGACAAGGCTGCTCCGGTTGAGGCAGACGAGTTCGATGC
CGAAAGTGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0MIY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.011

98.305

0.757
  recA Vibrio cholerae strain A1552

78.659

92.655

0.729
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.659

92.655

0.729
  recA Acinetobacter baumannii D1279779

72.886

96.893

0.706
  recA Acinetobacter baylyi ADP1

72.384

97.175

0.703
  recA Glaesserella parasuis strain SC1401

70.538

99.718

0.703
  recA Ralstonia pseudosolanacearum GMI1000

74.214

89.831

0.667
  recA Neisseria gonorrhoeae MS11

71.779

92.09

0.661
  recA Neisseria gonorrhoeae MS11

71.779

92.09

0.661
  recA Neisseria gonorrhoeae strain FA1090

71.779

92.09

0.661
  recA Helicobacter pylori strain NCTC11637

61.628

97.175

0.599
  recA Helicobacter pylori 26695

61.047

97.175

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

93.503

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.113

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

60

96.045

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Streptococcus pneumoniae Rx1

61.61

91.243

0.562
  recA Streptococcus pneumoniae D39

61.61

91.243

0.562
  recA Streptococcus pneumoniae R6

61.61

91.243

0.562
  recA Streptococcus pneumoniae TIGR4

61.61

91.243

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.366

92.655

0.559
  recA Streptococcus mitis SK321

61.3

91.243

0.559
  recA Streptococcus mitis NCTC 12261

61.3

91.243

0.559
  recA Streptococcus mutans UA159

60.372

91.243

0.551
  recA Streptococcus pyogenes NZ131

60.062

91.243

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.895

91.243

0.528