Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QMK35_RS07785 Genome accession   NZ_CP126540
Coordinates   1634020..1635075 (-) Length   351 a.a.
NCBI ID   WP_107383979.1    Uniprot ID   A0A2T4LTT0
Organism   Staphylococcus cohnii strain SDAQ-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1629020..1640075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK35_RS07770 (QMK35_07770) - 1630542..1631333 (-) 792 WP_107505257.1 TIGR00282 family metallophosphoesterase -
  QMK35_RS07775 (QMK35_07775) - 1631499..1631714 (+) 216 WP_019468712.1 hypothetical protein -
  QMK35_RS07780 (QMK35_07780) rny 1632130..1633689 (-) 1560 WP_019468711.1 ribonuclease Y -
  QMK35_RS07785 (QMK35_07785) recA 1634020..1635075 (-) 1056 WP_107383979.1 recombinase RecA Machinery gene
  QMK35_RS07790 (QMK35_07790) - 1635246..1636391 (-) 1146 WP_285159395.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  QMK35_RS07795 (QMK35_07795) pgsA 1636621..1637199 (-) 579 WP_107384813.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMK35_RS07800 (QMK35_07800) - 1637253..1637645 (-) 393 WP_107384814.1 RodZ family helix-turn-helix domain-containing protein -
  QMK35_RS07805 (QMK35_07805) - 1637677..1638507 (-) 831 WP_285159397.1 DUF3388 domain-containing protein -
  QMK35_RS07810 (QMK35_07810) - 1638700..1639404 (-) 705 WP_107384815.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38187.28 Da        Isoelectric Point: 5.0264

>NTDB_id=838683 QMK35_RS07785 WP_107383979.1 1634020..1635075(-) (recA) [Staphylococcus cohnii strain SDAQ-1]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVIDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVNKSGAWYSYNGERMGQGKENVKLYLKENPKVKQEIDQ
KLREKLGIFDGDVDEKEEEEATATLFDEKDE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=838683 QMK35_RS07785 WP_107383979.1 1634020..1635075(-) (recA) [Staphylococcus cohnii strain SDAQ-1]
TTGGATAATGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ACTTGGTGATAATGAAGCACGTAAAGTTTCTAGTGTATCAAGTGGTTCAGTAACTCTAGATAACGCATTAGGAGTTGGTG
GTTACCCTAAAGGTAGAATTATAGAAATATACGGACCAGAAAGTTCCGGTAAAACAACAGTTGCATTACATGCCATAGCT
GAAGTACAAAAAAATGGTGGCATTGCCGCATTTATTGATGCTGAACATGCTTTAGACCCAGTTTATGCTGAAGCATTAGG
TGTTGATATTCAAAATTTATACTTGTCTCAACCAGATCACGGTGAACAAGGCTTAGAAATTGCTGAAGCATTTGTTAGAA
GTGGTGCGGTAGATATCGTTGTTATCGACTCTGTAGCTGCGTTAACGCCGAAAGCTGAAATTGAAGGTGAAATGGGCGAT
ACACACGTCGGTTTACAAGCGCGTTTAATGTCACAAGCGCTACGTAAATTGTCTGGCGCTATTTCTAAATCAAATACAAC
TGCTGTATTTATAAATCAAATTCGTGAAAAAGTTGGCGTTATGTTTGGTAATCCTGAAACGACACCAGGTGGACGTGCAT
TGAAATTCTATAGCTCAGTGCGTTTAGAAGTTCGTCGTGCTGAACAGTTGAAACAAGGTCAAGAAATTGTTGGTAACAGA
ACAAAAATTAAAGTGGTAAAAAATAAAGTAGCGCCTCCATTTAGAGTGGCAGAAGTTGATATGATGTACGGCAAAGGTAT
CTCGAAAGAAGGCGAACTCATTGATCTCGGTGTAGAAAATGAAATCGTCAATAAATCGGGTGCTTGGTATTCTTACAATG
GTGAACGTATGGGTCAAGGTAAAGAAAACGTTAAACTATATTTAAAAGAAAATCCAAAAGTTAAACAAGAAATCGACCAA
AAATTGCGAGAAAAACTTGGTATTTTCGATGGTGACGTAGATGAAAAAGAGGAAGAAGAAGCAACAGCTACACTTTTTGA
TGAAAAAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4LTT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.767

92.877

0.704
  recA Latilactobacillus sakei subsp. sakei 23K

70.732

93.447

0.661
  recA Streptococcus mutans UA159

63.456

100

0.638
  recA Streptococcus pneumoniae R6

65.103

97.151

0.632
  recA Streptococcus pneumoniae Rx1

65.103

97.151

0.632
  recA Streptococcus pneumoniae D39

65.103

97.151

0.632
  recA Streptococcus pneumoniae TIGR4

65.103

97.151

0.632
  recA Streptococcus pyogenes NZ131

67.477

93.732

0.632
  recA Streptococcus mitis NCTC 12261

64.244

98.006

0.63
  recA Lactococcus lactis subsp. cremoris KW2

66.465

94.302

0.627
  recA Neisseria gonorrhoeae MS11

63.953

98.006

0.627
  recA Neisseria gonorrhoeae strain FA1090

63.953

98.006

0.627
  recA Neisseria gonorrhoeae MS11

63.953

98.006

0.627
  recA Streptococcus mitis SK321

65.766

94.872

0.624
  recA Acinetobacter baylyi ADP1

63.848

97.721

0.624
  recA Acinetobacter baumannii D1279779

63.158

97.436

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.05

97.151

0.613
  recA Helicobacter pylori 26695

64.024

93.447

0.598
  recA Helicobacter pylori strain NCTC11637

63.72

93.447

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.804

92.877

0.593
  recA Vibrio cholerae strain A1552

63.804

92.877

0.593
  recA Ralstonia pseudosolanacearum GMI1000

66.134

89.174

0.59
  recA Pseudomonas stutzeri DSM 10701

61.963

92.877

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

94.302

0.57
  recA Glaesserella parasuis strain SC1401

61.491

91.738

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

91.168

0.55