Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QOV41_RS08000 Genome accession   NZ_CP126539
Coordinates   1637419..1638489 (+) Length   356 a.a.
NCBI ID   WP_284581223.1    Uniprot ID   -
Organism   Devosia rhizosphaerae strain RR2S18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1632419..1643489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOV41_RS19845 - 1634707..1634880 (+) 174 Protein_1578 DUF2237 family protein -
  QOV41_RS19850 - 1634957..1635088 (+) 132 WP_415926755.1 DUF2237 family protein -
  QOV41_RS07990 (QOV41_07990) - 1635085..1636104 (-) 1020 WP_284580657.1 aldo/keto reductase -
  QOV41_RS07995 (QOV41_07995) araD1 1636161..1637156 (-) 996 WP_284580659.1 AraD1 family protein -
  QOV41_RS08000 (QOV41_08000) recA 1637419..1638489 (+) 1071 WP_284581223.1 recombinase RecA Machinery gene
  QOV41_RS08005 (QOV41_08005) alaS 1638667..1641306 (+) 2640 WP_284580661.1 alanine--tRNA ligase -
  QOV41_RS08010 (QOV41_08010) - 1641354..1642238 (-) 885 WP_284580663.1 DMT family transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38017.51 Da        Isoelectric Point: 4.9582

>NTDB_id=838652 QOV41_RS08000 WP_284581223.1 1637419..1638489(+) (recA) [Devosia rhizosphaerae strain RR2S18]
MMASSLRVVEGGSMDKDKALAAALSQIERNFGKGSIMRLGEASSIEVESISTGSLGLDIALGIGGLPKGRIVEIFGPESS
GKTTLALHVIAEAQRKGGICAFVDAEHALDPIYARKLGVNVDDLLISQPDAGEQALEITDTLVRSGAIDVLVVDSVAALT
PRAELEGEMGDSLPGQQARLMSQAMRKLTSSISKSKCLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGA
LKDREEIVGNQTRVKVVKNKLAPPFRQVEFDIMYGEGISKTGELLDLGVKSGIVEKAGAWFSWDSQRLGQGRENARQFLK
DNPQIAATIEQGVRESSGLLGEVLLVAGGEEDTSDE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=838652 QOV41_RS08000 WP_284581223.1 1637419..1638489(+) (recA) [Devosia rhizosphaerae strain RR2S18]
ATCATGGCTAGCTCACTGCGCGTTGTTGAAGGTGGATCGATGGATAAGGACAAGGCACTTGCTGCGGCGCTCAGCCAGAT
CGAGCGCAATTTCGGCAAGGGCTCGATTATGCGTCTGGGCGAAGCCTCCTCCATTGAGGTGGAGTCCATCTCGACGGGCT
CGCTCGGTCTCGATATCGCCCTGGGCATTGGTGGTTTGCCCAAAGGTCGCATCGTCGAAATCTTCGGGCCGGAATCTTCA
GGTAAGACGACGCTGGCGTTACATGTCATTGCCGAGGCGCAGCGTAAGGGTGGTATTTGCGCCTTTGTTGATGCCGAGCA
TGCGCTCGATCCGATCTATGCTCGCAAGCTGGGGGTCAATGTCGATGATCTGCTGATCTCACAGCCTGATGCTGGTGAAC
AGGCCCTCGAAATTACCGACACACTGGTGCGCTCTGGGGCAATCGACGTGCTGGTGGTGGATTCGGTGGCGGCGCTCACC
CCGCGTGCCGAACTGGAAGGCGAGATGGGCGATAGCCTTCCTGGCCAGCAGGCTCGTCTGATGAGCCAGGCCATGCGCAA
GCTCACCTCCTCGATCAGCAAGTCCAAGTGTCTCGTCATCTTTATCAACCAGATCCGCATGAAGATCGGCGTGATGTACG
GTTCGCCTGAGACCACGACGGGCGGCAATGCGCTGAAGTTCTACGCGTCGGTTCGTCTCGACATCCGGCGCATCGGTGCA
CTCAAGGATCGCGAGGAGATCGTCGGCAACCAGACCCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCACCGTTCCGCCA
GGTCGAGTTCGACATCATGTATGGTGAGGGTATCTCCAAGACGGGCGAGCTGCTTGATCTCGGCGTTAAGTCGGGGATCG
TCGAAAAGGCTGGTGCCTGGTTCTCCTGGGACAGCCAGCGGTTGGGGCAGGGGCGCGAAAATGCCCGTCAGTTCCTCAAG
GACAATCCCCAGATCGCAGCCACCATCGAGCAAGGCGTGCGCGAGAGTTCGGGGCTGCTGGGCGAGGTGCTGCTGGTGGC
CGGTGGCGAAGAAGACACCTCCGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

66.087

96.91

0.64
  recA Neisseria gonorrhoeae strain FA1090

66.087

96.91

0.64
  recA Neisseria gonorrhoeae MS11

66.087

96.91

0.64
  recA Pseudomonas stutzeri DSM 10701

71.25

89.888

0.64
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.093

90.169

0.632
  recA Vibrio cholerae strain A1552

70.093

90.169

0.632
  recA Glaesserella parasuis strain SC1401

69.782

90.169

0.629
  recA Ralstonia pseudosolanacearum GMI1000

67.988

92.135

0.626
  recA Acinetobacter baylyi ADP1

68.847

90.169

0.621
  recA Acinetobacter baumannii D1279779

68.224

90.169

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.848

96.348

0.615
  recA Helicobacter pylori 26695

63.444

92.978

0.59
  recA Helicobacter pylori strain NCTC11637

63.444

92.978

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

64.308

91.292

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

91.854

0.587
  recA Streptococcus mitis NCTC 12261

61.515

92.697

0.57
  recA Streptococcus mitis SK321

61.515

92.697

0.57
  recA Streptococcus pneumoniae Rx1

61.212

92.697

0.567
  recA Streptococcus pneumoniae D39

61.212

92.697

0.567
  recA Streptococcus pneumoniae R6

61.212

92.697

0.567
  recA Streptococcus pneumoniae TIGR4

61.212

92.697

0.567
  recA Streptococcus mutans UA159

58.092

97.191

0.565
  recA Lactococcus lactis subsp. cremoris KW2

59.94

93.258

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

60.308

91.292

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.559

90.449

0.548
  recA Streptococcus pyogenes NZ131

60.185

91.011

0.548