Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QNO02_RS11355 Genome accession   NZ_CP126535
Coordinates   2586513..2587577 (+) Length   354 a.a.
NCBI ID   WP_062833851.1    Uniprot ID   A0A117I0S2
Organism   Paenibacillus sp. PK1-4R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2581513..2592577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNO02_RS11330 (QNO02_11330) - 2582049..2583113 (+) 1065 WP_289392047.1 RodZ domain-containing protein -
  QNO02_RS11335 (QNO02_11335) - 2583187..2583351 (+) 165 WP_167350848.1 hypothetical protein -
  QNO02_RS11340 (QNO02_11340) - 2583507..2583998 (+) 492 WP_017689115.1 YajQ family cyclic di-GMP-binding protein -
  QNO02_RS11345 (QNO02_11345) pgsA 2584319..2584906 (+) 588 WP_062833849.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNO02_RS11350 (QNO02_11350) - 2585014..2586270 (+) 1257 WP_091017238.1 competence/damage-inducible protein A -
  QNO02_RS11355 (QNO02_11355) recA 2586513..2587577 (+) 1065 WP_062833851.1 recombinase RecA Machinery gene
  QNO02_RS11360 (QNO02_11360) - 2587862..2588599 (+) 738 WP_091031821.1 regulatory protein RecX -
  QNO02_RS11365 (QNO02_11365) rny 2588910..2590451 (+) 1542 WP_036670418.1 ribonuclease Y -
  QNO02_RS11370 (QNO02_11370) - 2590606..2591400 (+) 795 WP_076330701.1 TIGR00282 family metallophosphoesterase -
  QNO02_RS11375 (QNO02_11375) - 2591518..2591778 (+) 261 WP_007430104.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38408.77 Da        Isoelectric Point: 5.0076

>NTDB_id=838612 QNO02_RS11355 WP_062833851.1 2586513..2587577(+) (recA) [Paenibacillus sp. PK1-4R]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMNVEIIPSGSLALDIALGTGGLPKGRIVEIYGPESSGKTTVALHAIAE
VQRVGGQAAFIDAEHALDPQYASKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKSGNDMIGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISREGSIIDIGTELDIVNKSGAWYSYEGERLGQGRENAKQFMKEHKDIAEIIEQK
IRVASNLTTAVPAPTSEEQQKEAEEEQELFEINE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=838612 QNO02_RS11355 WP_062833851.1 2586513..2587577(+) (recA) [Paenibacillus sp. PK1-4R]
TTGTCAGACCGTCGTGCCGCGCTTGATATGGCGCTCCGTCAAATAGAGAAGCAATTTGGTAAAGGATCCATCATGAAACT
GGGTGAGTCCACTCATATGAATGTGGAAATTATTCCCAGTGGTTCCTTGGCTTTGGATATTGCATTAGGAACAGGCGGCT
TGCCTAAAGGCCGTATTGTTGAAATATATGGACCTGAATCCTCAGGTAAAACAACTGTCGCATTACATGCGATTGCTGAA
GTACAACGTGTTGGTGGACAAGCAGCATTTATCGATGCCGAGCATGCTCTTGATCCTCAATATGCAAGCAAATTGGGTGT
TAACATTGACGAATTGCTTCTATCTCAGCCAGATACGGGTGAGCAAGGGCTGGAAATTGCAGAAGCTCTTGTACGCAGTG
GTGCAGTAGATATCGTTGTTATTGACTCCGTAGCTGCCTTGGTTCCAAAAGCAGAGATTGAAGGCGAAATGGGTGATTCA
CACGTTGGTTTGCAAGCGCGTTTGATGTCTCAGGCGTTGCGTAAATTGTCTGGTGCAATCAGCAAATCCAAAACAATCGC
AATCTTCATTAACCAGCTTCGTGAGAAAGTCGGCGTTATGTTTGGTAACCCGGAAACAACACCTGGTGGTCGTGCTCTGA
AGTTTTATTCCACAGTACGTCTGGATGTGCGTCGTATTGAGAGTATCAAATCAGGCAATGACATGATTGGTAACCGTACT
CGTATTAAAGTTGTGAAAAACAAAGTGGCACCTCCGTTTAAACAAGCGGAAGTGGATATCATGTATGGCGAGGGTATTTC
GAGAGAAGGCAGTATCATTGACATTGGTACAGAGCTGGATATCGTTAATAAAAGTGGTGCATGGTACTCCTACGAAGGCG
AGCGTTTAGGACAAGGCCGTGAGAACGCAAAGCAGTTCATGAAAGAGCATAAAGACATTGCTGAAATCATTGAACAAAAA
ATTCGGGTAGCTAGTAACTTGACTACCGCAGTTCCTGCGCCAACTAGTGAAGAGCAACAAAAAGAAGCAGAAGAAGAACA
AGAATTGTTTGAAATCAACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A117I0S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.851

90.96

0.763
  recA Latilactobacillus sakei subsp. sakei 23K

72.727

96.328

0.701
  recA Streptococcus mutans UA159

66.571

98.87

0.658
  recA Streptococcus pneumoniae D39

65.242

99.153

0.647
  recA Streptococcus pneumoniae Rx1

65.242

99.153

0.647
  recA Streptococcus pneumoniae R6

65.242

99.153

0.647
  recA Streptococcus pneumoniae TIGR4

65.242

99.153

0.647
  recA Streptococcus pyogenes NZ131

70.154

91.808

0.644
  recA Lactococcus lactis subsp. cremoris KW2

68.788

93.22

0.641
  recA Streptococcus mitis SK321

65.889

96.893

0.638
  recA Streptococcus mitis NCTC 12261

68.182

93.22

0.636
  recA Neisseria gonorrhoeae MS11

64.371

94.35

0.607
  recA Neisseria gonorrhoeae MS11

64.371

94.35

0.607
  recA Neisseria gonorrhoeae strain FA1090

64.371

94.35

0.607
  recA Acinetobacter baumannii D1279779

61.494

98.305

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.138

92.373

0.602
  recA Acinetobacter baylyi ADP1

60.511

99.435

0.602
  recA Vibrio cholerae strain A1552

66.25

90.395

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.25

90.395

0.599
  recA Pseudomonas stutzeri DSM 10701

62.874

94.35

0.593
  recA Glaesserella parasuis strain SC1401

60.29

97.458

0.588
  recA Ralstonia pseudosolanacearum GMI1000

67.532

87.006

0.588
  recA Helicobacter pylori 26695

62.385

92.373

0.576
  recA Helicobacter pylori strain NCTC11637

62.08

92.373

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

90.678

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.443

91.243

0.542