Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   U9S62_RS28640 Genome accession   NZ_CP141683
Coordinates   6137942..6138307 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain ZM21     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6132942..6143307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9S62_RS28625 (U9S62_28625) pilK 6134286..6135161 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  U9S62_RS28630 (U9S62_28630) pilJ 6135222..6137270 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  U9S62_RS28635 (U9S62_28635) - 6137355..6137891 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  U9S62_RS28640 (U9S62_28640) pilH 6137942..6138307 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  U9S62_RS28645 (U9S62_28645) pilG 6138354..6138761 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  U9S62_RS28650 (U9S62_28650) gshB 6139016..6139969 (+) 954 WP_003100943.1 glutathione synthase -
  U9S62_RS28655 (U9S62_28655) - 6140116..6141009 (+) 894 WP_003160914.1 energy transducer TonB -
  U9S62_RS28660 (U9S62_28660) - 6141058..6141627 (+) 570 WP_070870543.1 YqgE/AlgH family protein -
  U9S62_RS28665 (U9S62_28665) ruvX 6141627..6142061 (+) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  U9S62_RS28670 (U9S62_28670) pyrR 6142173..6142685 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=837239 U9S62_RS28640 WP_003084587.1 6137942..6138307(-) (pilH) [Pseudomonas aeruginosa strain ZM21]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=837239 U9S62_RS28640 WP_003084587.1 6137942..6138307(-) (pilH) [Pseudomonas aeruginosa strain ZM21]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364