Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P7644_RS19330 Genome accession   NZ_CP126238
Coordinates   4063419..4064525 (+) Length   368 a.a.
NCBI ID   WP_404300867.1    Uniprot ID   -
Organism   Alicycliphilus denitrificans strain Ylb10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4058419..4069525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7644_RS19305 (P7644_19275) - 4058980..4059654 (-) 675 WP_404300862.1 response regulator -
  P7644_RS19310 (P7644_19280) alr 4059816..4060877 (-) 1062 WP_404300863.1 alanine racemase -
  P7644_RS19315 (P7644_19285) - 4060874..4062184 (-) 1311 WP_404300864.1 D-amino acid dehydrogenase -
  P7644_RS19320 (P7644_19290) - 4062311..4062784 (+) 474 WP_404300865.1 winged helix-turn-helix transcriptional regulator -
  P7644_RS19325 (P7644_19295) - 4062796..4063278 (-) 483 WP_404300866.1 MarR family winged helix-turn-helix transcriptional regulator -
  P7644_RS19330 (P7644_19300) recA 4063419..4064525 (+) 1107 WP_404300867.1 recombinase RecA Machinery gene
  P7644_RS19335 (P7644_19305) recX 4064606..4065073 (+) 468 WP_404300868.1 recombination regulator RecX -
  P7644_RS19340 (P7644_19310) - 4065171..4067468 (-) 2298 WP_404300869.1 DUF1631 family protein -
  P7644_RS19345 (P7644_19315) secF 4067525..4068478 (-) 954 WP_404300870.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39294.03 Da        Isoelectric Point: 5.2087

>NTDB_id=837239 P7644_RS19330 WP_404300867.1 4063419..4064525(+) (recA) [Alicycliphilus denitrificans strain Ylb10]
MDTTVKTAVDQSEKAKALQAALAQIEKQFGKGTIMRLGEGEQVQDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVIAEMQKLGGTCAFIDAEHALDTQYAQKLGVNLNDILISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALVP
KAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETRVKVVKNKVSPPFKQAEFDILFGEGISREGEIIDMGVNARILEKSGAWYAYNGEKIGQGRDNAREFLRE
NPGLAVEIENKVRDSLGIALLPTSGAAQAPEDKPARGKKADKAAEAEA

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=837239 P7644_RS19330 WP_404300867.1 4063419..4064525(+) (recA) [Alicycliphilus denitrificans strain Ylb10]
ATGGACACCACCGTCAAGACCGCCGTCGACCAGAGCGAAAAGGCCAAGGCCCTGCAGGCCGCGCTGGCCCAGATCGAGAA
GCAGTTCGGCAAGGGCACCATCATGCGCCTGGGCGAAGGCGAGCAGGTGCAGGACATCCAGGTCGTCTCCACCGGCTCGC
TGGGCCTGGACATCGCCCTGGGCGTGGGCGGCCTGCCGCGCGGGCGCGTGGTCGAGATCTACGGACCGGAGTCCTCGGGC
AAGACCACGCTGACGCTGCAGGTGATCGCCGAGATGCAAAAGCTCGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGC
GCTCGACACCCAGTACGCGCAGAAGCTCGGCGTGAATCTGAACGACATCCTGATCAGCCAGCCCGATACCGGCGAGCAGG
CGCTGGAGATCGTGGACAGCCTGGTGCGCTCCGGCGCGGTGGACCTGATCGTGGTGGACTCGGTCGCCGCCCTGGTGCCG
AAGGCCGAGATCGAGGGCGAGATGGGCGACGCCCTGCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCT
CACGGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAAATCCGCATGAAGATCGGCGTCATGTTCGGCA
GCCCCGAAACCACGACGGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGATATCCGCCGCACCGGCACCATC
AAGAAGGGCGACGAGGCCATAGGCAACGAGACCCGCGTGAAGGTGGTGAAGAACAAGGTCTCGCCCCCGTTCAAGCAGGC
CGAGTTCGACATCCTGTTCGGCGAGGGCATCTCGCGCGAGGGCGAGATCATCGACATGGGCGTGAACGCGCGCATCCTGG
AGAAGAGCGGCGCCTGGTACGCCTACAACGGTGAAAAGATCGGCCAGGGCCGCGACAACGCGCGCGAGTTCCTGCGCGAA
AACCCCGGCCTGGCCGTGGAGATCGAGAACAAGGTGCGCGACAGCCTGGGCATCGCCCTGCTGCCCACCAGCGGTGCGGC
GCAGGCGCCCGAGGACAAGCCCGCGCGCGGCAAGAAGGCCGACAAGGCCGCCGAGGCCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.657

91.848

0.75
  recA Pseudomonas stutzeri DSM 10701

74.613

87.772

0.655
  recA Neisseria gonorrhoeae MS11

71.471

90.489

0.647
  recA Neisseria gonorrhoeae strain FA1090

71.471

90.489

0.647
  recA Neisseria gonorrhoeae MS11

71.471

90.489

0.647
  recA Acinetobacter baumannii D1279779

69.006

92.935

0.641
  recA Acinetobacter baylyi ADP1

68.915

92.663

0.639
  recA Glaesserella parasuis strain SC1401

69.552

91.033

0.633
  recA Vibrio cholerae strain A1552

70.588

87.772

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.588

87.772

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.791

88.587

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.476

91.304

0.598
  recA Helicobacter pylori 26695

64.35

89.946

0.579
  recA Helicobacter pylori strain NCTC11637

64.35

89.946

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

63.855

90.217

0.576
  recA Streptococcus mutans UA159

59.04

96.196

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

88.859

0.568
  recA Lactococcus lactis subsp. cremoris KW2

59.77

94.565

0.565
  recA Streptococcus mitis SK321

58.739

94.837

0.557
  recA Streptococcus pyogenes NZ131

62.006

89.402

0.554
  recA Streptococcus pneumoniae Rx1

60.725

89.946

0.546
  recA Streptococcus pneumoniae D39

60.725

89.946

0.546
  recA Streptococcus pneumoniae R6

60.725

89.946

0.546
  recA Streptococcus pneumoniae TIGR4

60.725

89.946

0.546
  recA Streptococcus mitis NCTC 12261

60.423

89.946

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.16

91.576

0.533