Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QN243_RS11960 Genome accession   NZ_CP126172
Coordinates   2877594..2878631 (-) Length   345 a.a.
NCBI ID   WP_160964901.1    Uniprot ID   -
Organism   Xanthomonas rydalmerensis strain DAR34883     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2872594..2883631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN243_RS11945 (QN243_11950) csrA 2873875..2874090 (-) 216 WP_160964895.1 carbon storage regulator CsrA -
  QN243_RS11950 (QN243_11955) alaS 2874227..2876878 (-) 2652 WP_317843279.1 alanine--tRNA ligase -
  QN243_RS11955 (QN243_11960) recX 2876984..2877478 (-) 495 WP_184643208.1 recombination regulator RecX -
  QN243_RS11960 (QN243_11965) recA 2877594..2878631 (-) 1038 WP_160964901.1 recombinase RecA Machinery gene
  QN243_RS11965 (QN243_11970) lexA 2878828..2879463 (-) 636 WP_184643210.1 transcriptional repressor LexA -
  QN243_RS11970 (QN243_11975) ubiB 2879810..2881486 (-) 1677 WP_160965205.1 2-polyprenylphenol 6-hydroxylase -
  QN243_RS11975 (QN243_11980) - 2881521..2882015 (-) 495 WP_048489001.1 nicotinamide-nucleotide amidohydrolase family protein -
  QN243_RS11980 (QN243_11985) hflX 2882172..2883497 (-) 1326 WP_184448511.1 ribosome rescue GTPase HflX -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37131.70 Da        Isoelectric Point: 5.0628

>NTDB_id=837076 QN243_RS11960 WP_160964901.1 2877594..2878631(-) (recA) [Xanthomonas rydalmerensis strain DAR34883]
MDENKKRALAAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAAKLGVNVDELLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGSERIGQGKDNSRQYLRDNPQVAAKL
ESELREKFQPAEIAPSEAEAEDADA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=837076 QN243_RS11960 WP_160964901.1 2877594..2878631(-) (recA) [Xanthomonas rydalmerensis strain DAR34883]
ATGGACGAGAACAAGAAGCGCGCGCTCGCTGCCGCCCTGAGCCAGATCGAGAAGCAGTTCGGCAAGGGCTCGGTGATGCG
GATGGGCGATCGCGTCATCGAAGCAGTGGAAGTGATTCCGACCGGCTCGCTGATGCTGGACATCGCGCTGGGCATCGGCG
GCCTGCCGAAGGGCCGCGTGGTCGAGATCTACGGTCCTGAATCTTCGGGCAAGACCACCCTGACCCTGCAGGCCATCGCC
CAGTGTCAGAAGAACGGCGGCACTGCCGCGTTCATCGACGCCGAGCACGCGCTTGATCCGATCTACGCCGCCAAGCTTGG
CGTCAACGTCGACGAGCTGCTGCTGTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CGGGATCGGTAGACATCGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCCAAGGCCGAAATCGAAGGCGAGATGGGCGAT
CAGTTGCCGGGCCTGCAGGCACGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACACTCT
GGTGGTGTTCATCAACCAGTTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGATATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTGTACGGCGA
GGGCATCAGCCGCGAAGGCGAACTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAAGCGGGTGCCTGGTACAGCT
ACGGCAGCGAGCGCATCGGCCAGGGCAAGGACAATTCTCGCCAGTACCTGCGCGACAACCCGCAGGTGGCGGCGAAGCTG
GAAAGCGAGCTGCGCGAGAAGTTCCAGCCCGCGGAAATCGCGCCGAGCGAGGCCGAGGCGGAAGACGCCGACGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

72.866

95.072

0.693
  recA Vibrio cholerae strain A1552

68.391

100

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.391

100

0.69
  recA Acinetobacter baumannii D1279779

72.561

95.072

0.69
  recA Pseudomonas stutzeri DSM 10701

71.951

95.072

0.684
  recA Ralstonia pseudosolanacearum GMI1000

75.399

90.725

0.684
  recA Neisseria gonorrhoeae MS11

66.474

100

0.667
  recA Neisseria gonorrhoeae MS11

66.474

100

0.667
  recA Neisseria gonorrhoeae strain FA1090

66.474

100

0.667
  recA Glaesserella parasuis strain SC1401

66.082

99.13

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

96.812

0.612
  recA Latilactobacillus sakei subsp. sakei 23K

63.222

95.362

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.75

92.754

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.203

0.591
  recA Helicobacter pylori strain NCTC11637

60.417

97.391

0.588
  recA Helicobacter pylori 26695

60.119

97.391

0.586
  recA Streptococcus mitis SK321

61.585

95.072

0.586
  recA Streptococcus pyogenes NZ131

60.909

95.652

0.583
  recA Streptococcus pneumoniae Rx1

60.976

95.072

0.58
  recA Streptococcus pneumoniae D39

60.976

95.072

0.58
  recA Streptococcus mitis NCTC 12261

60.976

95.072

0.58
  recA Streptococcus pneumoniae R6

60.976

95.072

0.58
  recA Streptococcus pneumoniae TIGR4

60.976

95.072

0.58
  recA Streptococcus mutans UA159

60.606

95.652

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.788

95.652

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.203

0.559