Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JLC71_RS02965 Genome accession   NZ_AP024094
Coordinates   624198..625250 (-) Length   350 a.a.
NCBI ID   WP_200917194.1    Uniprot ID   A0A7I8E9Z6
Organism   Jeongeupia sp. HS-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 619198..630250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLC71_RS02940 (JHS3_05750) - 620007..621209 (-) 1203 WP_236250956.1 multidrug effflux MFS transporter -
  JLC71_RS02945 (JHS3_05760) - 621351..621989 (-) 639 WP_200917191.1 NAD(P)-dependent oxidoreductase -
  JLC71_RS02950 (JHS3_05770) - 622021..622653 (-) 633 WP_200917192.1 DsbA family protein -
  JLC71_RS02955 (JHS3_05780) - 622761..623660 (+) 900 WP_200917193.1 LysR family transcriptional regulator -
  JLC71_RS02960 (JHS3_05790) recX 623665..624141 (-) 477 WP_236250957.1 recombination regulator RecX -
  JLC71_RS02965 (JHS3_05800) recA 624198..625250 (-) 1053 WP_200917194.1 recombinase RecA Machinery gene
  JLC71_RS02970 (JHS3_05810) - 625471..626730 (+) 1260 WP_200917195.1 D-amino acid dehydrogenase -
  JLC71_RS02975 (JHS3_05820) - 626743..626958 (+) 216 WP_200917196.1 hypothetical protein -
  JLC71_RS02980 (JHS3_05830) - 626958..627401 (+) 444 WP_200917197.1 spore coat protein U domain-containing protein -
  JLC71_RS02985 (JHS3_05840) - 627524..627994 (+) 471 WP_200917198.1 spore coat protein U domain-containing protein -
  JLC71_RS02990 (JHS3_05850) - 627991..628713 (+) 723 WP_200917199.1 molecular chaperone -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37644.38 Da        Isoelectric Point: 5.1691

>NTDB_id=83452 JLC71_RS02965 WP_200917194.1 624198..625250(-) (recA) [Jeongeupia sp. HS-3]
MDDNKSKALAAALAQIERQFGKGSIMKMGENQIENDLQVVSTGSLGLDLALGVGGLPRGRVVEIFGPESSGKTTLCLHVV
AEIQKLGGVAAYIDAENALDPIYASRLGVNVSEMLISQPDTGEQGLEIADMLVRSGGVDIIVVDSVAALVPKAEIEGEMG
DVHVGLQARLMSQALRKLTGNIKRTNTLVIFINQLRMKIGQMMPGQSPETTTGGNALKFYASVRLDIRRIGAVKKGDEII
GNQTKVKIAKNKVAPPFRIVTFDILYGEGISREGEIIEQGVAQKIVEKSGAWYSYNGNKIGQGMENSRQYLKDNPEVAAE
IVAKVREKIGLVMPLEPARAFDDVAEELAE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=83452 JLC71_RS02965 WP_200917194.1 624198..625250(-) (recA) [Jeongeupia sp. HS-3]
ATGGACGACAACAAGAGCAAGGCGCTCGCGGCGGCACTGGCCCAGATCGAACGACAGTTCGGCAAGGGCTCCATCATGAA
GATGGGCGAAAACCAGATCGAGAACGACCTGCAAGTCGTTTCGACCGGTTCGCTCGGTCTCGATCTCGCGCTCGGCGTCG
GCGGTTTGCCGCGTGGCCGGGTGGTCGAAATCTTCGGGCCGGAATCGTCGGGTAAAACCACGCTGTGCCTGCATGTCGTT
GCCGAAATCCAGAAGCTGGGTGGCGTCGCCGCCTACATCGACGCGGAAAACGCGCTCGACCCGATCTACGCCAGCCGCCT
TGGCGTCAATGTGTCGGAAATGCTGATTTCGCAACCGGATACCGGTGAGCAAGGTCTGGAAATCGCCGACATGCTGGTTC
GCTCCGGTGGCGTTGACATCATCGTCGTCGACTCGGTCGCCGCGCTGGTGCCGAAGGCCGAAATCGAAGGCGAAATGGGC
GACGTGCACGTCGGCCTGCAAGCCCGTTTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAATATCAAGCGCACCAATAC
GCTGGTGATCTTCATTAACCAGCTGCGCATGAAGATCGGCCAGATGATGCCCGGCCAGAGCCCGGAAACCACTACCGGCG
GCAACGCGCTGAAGTTCTACGCCTCGGTTCGCCTCGACATCCGCCGTATCGGCGCGGTGAAAAAGGGCGACGAGATCATC
GGCAACCAGACCAAGGTCAAGATCGCCAAGAACAAGGTCGCGCCACCGTTCCGCATCGTCACTTTCGATATCCTCTACGG
CGAAGGCATTTCGCGTGAAGGCGAAATCATCGAACAGGGCGTCGCGCAGAAGATCGTCGAGAAATCCGGCGCCTGGTACA
GCTACAACGGCAACAAGATCGGTCAGGGCATGGAGAACTCGCGCCAGTACCTGAAGGATAATCCGGAAGTCGCCGCCGAG
ATCGTCGCCAAGGTCCGTGAAAAGATCGGCTTGGTGATGCCGCTGGAACCGGCGCGTGCATTCGACGATGTCGCCGAAGA
GTTGGCGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8E9Z6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.795

94.857

0.7
  recA Neisseria gonorrhoeae MS11

72.836

95.714

0.697
  recA Neisseria gonorrhoeae MS11

72.836

95.714

0.697
  recA Neisseria gonorrhoeae strain FA1090

72.836

95.714

0.697
  recA Pseudomonas stutzeri DSM 10701

66.857

100

0.669
  recA Acinetobacter baylyi ADP1

65.994

99.143

0.654
  recA Vibrio cholerae strain A1552

64.368

99.429

0.64
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.368

99.429

0.64
  recA Glaesserella parasuis strain SC1401

67.89

93.429

0.634
  recA Acinetobacter baumannii D1279779

66.261

94

0.623
  recA Helicobacter pylori strain NCTC11637

62.281

97.714

0.609
  recA Helicobacter pylori 26695

61.988

97.714

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.142

94.571

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.143

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

93.714

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

62.31

94

0.586
  recA Streptococcus mitis SK321

59.184

98

0.58
  recA Streptococcus mitis NCTC 12261

58.046

99.429

0.577
  recA Lactococcus lactis subsp. cremoris KW2

60.479

95.429

0.577
  recA Streptococcus mutans UA159

59.88

95.429

0.571
  recA Streptococcus pneumoniae TIGR4

59.639

94.857

0.566
  recA Streptococcus pyogenes NZ131

59.639

94.857

0.566
  recA Streptococcus pneumoniae Rx1

59.639

94.857

0.566
  recA Streptococcus pneumoniae D39

59.639

94.857

0.566
  recA Streptococcus pneumoniae R6

59.639

94.857

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.798

93.429

0.54

Multiple sequence alignment