Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ITI97_RS06855 | Genome accession | NZ_CP126068 |
| Coordinates | 1433718..1434764 (+) | Length | 348 a.a. |
| NCBI ID | WP_021364420.1 | Uniprot ID | A0A9X8RFQ1 |
| Organism | Clostridioides difficile strain CDI-24 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1407670..1472504 | 1433718..1434764 | within | 0 |
Gene organization within MGE regions
Location: 1407670..1472504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ITI97_RS06740 (ITI97_06720) | rimP | 1410086..1410547 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| ITI97_RS06745 (ITI97_06725) | nusA | 1410577..1411731 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| ITI97_RS06750 (ITI97_06730) | rnpM | 1411738..1412019 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| ITI97_RS06755 (ITI97_06735) | - | 1412009..1412320 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| ITI97_RS06760 (ITI97_06740) | infB | 1412342..1414282 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| ITI97_RS06765 (ITI97_06745) | rbfA | 1414325..1414705 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| ITI97_RS06770 (ITI97_06750) | - | 1414686..1415363 (+) | 678 | Protein_1245 | DHH family phosphoesterase | - |
| ITI97_RS06775 (ITI97_06755) | tnpB | 1416003..1417121 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| ITI97_RS06780 (ITI97_06760) | - | 1417239..1417544 (+) | 306 | Protein_1247 | DHH family phosphoesterase | - |
| ITI97_RS06785 (ITI97_06765) | truB | 1417557..1418462 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| ITI97_RS06790 (ITI97_06770) | - | 1418593..1419522 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| ITI97_RS06795 (ITI97_06775) | rpsO | 1419626..1419883 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| ITI97_RS06800 (ITI97_06780) | - | 1420123..1420968 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| ITI97_RS06805 (ITI97_06785) | pnp | 1421093..1423204 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| ITI97_RS06810 (ITI97_06790) | - | 1423470..1424213 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| ITI97_RS06815 (ITI97_06795) | - | 1424371..1425618 (+) | 1248 | WP_009902409.1 | M16 family metallopeptidase | - |
| ITI97_RS06820 (ITI97_06800) | - | 1425653..1425898 (+) | 246 | WP_021364423.1 | YlmC/YmxH family sporulation protein | - |
| ITI97_RS06825 (ITI97_06805) | dapG | 1425908..1427131 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| ITI97_RS06830 (ITI97_06810) | - | 1427244..1427978 (+) | 735 | WP_021364422.1 | ClpP family protease | - |
| ITI97_RS06835 (ITI97_06815) | - | 1428101..1430512 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| ITI97_RS06840 (ITI97_06820) | mnmH | 1430515..1431573 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| ITI97_RS06845 (ITI97_06825) | rimO | 1431567..1432901 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| ITI97_RS06850 (ITI97_06830) | pgsA | 1432888..1433430 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| ITI97_RS06855 (ITI97_06835) | recA | 1433718..1434764 (+) | 1047 | WP_021364420.1 | recombinase RecA | Machinery gene |
| ITI97_RS06860 (ITI97_06840) | rny | 1434940..1436481 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| ITI97_RS06865 (ITI97_06845) | - | 1437116..1438897 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| ITI97_RS06870 (ITI97_06850) | lepB | 1438979..1439509 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| ITI97_RS06875 (ITI97_06855) | - | 1439549..1440373 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| ITI97_RS06880 (ITI97_06860) | - | 1440630..1441538 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| ITI97_RS06885 (ITI97_06865) | purB | 1441682..1443127 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| ITI97_RS06890 (ITI97_06870) | - | 1443438..1443890 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| ITI97_RS06895 (ITI97_06875) | - | 1444302..1445879 (+) | 1578 | WP_021364419.1 | PTS transporter subunit EIIC | - |
| ITI97_RS06900 (ITI97_06880) | - | 1446027..1446779 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| ITI97_RS06905 (ITI97_06885) | - | 1446912..1448258 (+) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| ITI97_RS06910 (ITI97_06890) | - | 1448370..1449566 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| ITI97_RS06915 (ITI97_06895) | galT | 1449951..1450901 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| ITI97_RS06920 (ITI97_06900) | - | 1451062..1451814 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| ITI97_RS06925 (ITI97_06905) | - | 1451906..1452682 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| ITI97_RS06930 (ITI97_06910) | - | 1452997..1454895 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| ITI97_RS06935 (ITI97_06915) | - | 1455023..1456144 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| ITI97_RS06940 (ITI97_06920) | - | 1456343..1456675 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| ITI97_RS06945 (ITI97_06925) | - | 1456662..1457720 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| ITI97_RS06950 (ITI97_06930) | - | 1457713..1458783 (+) | 1071 | WP_021364425.1 | DUF4097 family beta strand repeat-containing protein | - |
| ITI97_RS06955 (ITI97_06935) | - | 1458885..1459421 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| ITI97_RS06960 (ITI97_06940) | - | 1459537..1460244 (+) | 708 | WP_009902422.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| ITI97_RS06965 (ITI97_06945) | - | 1460246..1460962 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| ITI97_RS06970 (ITI97_06950) | - | 1460964..1461722 (+) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| ITI97_RS06975 (ITI97_06955) | - | 1461857..1463245 (+) | 1389 | WP_021364432.1 | two-component system sensor histidine kinase | - |
| ITI97_RS06980 (ITI97_06960) | - | 1463321..1464142 (-) | 822 | WP_021364435.1 | pyridoxamine kinase | - |
| ITI97_RS06985 (ITI97_06965) | - | 1464393..1465547 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| ITI97_RS06990 (ITI97_06970) | - | 1465730..1465930 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| ITI97_RS06995 (ITI97_06975) | - | 1466351..1466779 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| ITI97_RS07000 (ITI97_06980) | - | 1466922..1467677 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| ITI97_RS07005 (ITI97_06985) | - | 1468378..1468884 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ITI97_RS07010 (ITI97_06990) | - | 1468966..1469286 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| ITI97_RS07015 (ITI97_06995) | - | 1469455..1469652 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| ITI97_RS07020 (ITI97_07000) | - | 1469757..1470197 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| ITI97_RS07025 (ITI97_07005) | - | 1470446..1470889 (+) | 444 | WP_003438413.1 | phage tail terminator family protein | - |
| ITI97_RS07030 (ITI97_07010) | - | 1470894..1471958 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| ITI97_RS07035 (ITI97_07015) | - | 1471972..1472400 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37389.74 Da Isoelectric Point: 4.8236
>NTDB_id=834487 ITI97_RS06855 WP_021364420.1 1433718..1434764(+) (recA) [Clostridioides difficile strain CDI-24]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=834487 ITI97_RS06855 WP_021364420.1 1433718..1434764(+) (recA) [Clostridioides difficile strain CDI-24]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.