Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QNA12_RS15135 Genome accession   NZ_CP125967
Coordinates   3349221..3350291 (-) Length   356 a.a.
NCBI ID   WP_264498098.1    Uniprot ID   -
Organism   Pectobacterium cacticida strain DPMP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3344221..3355291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNA12_RS15120 (QNA12_15120) csrA 3345421..3345606 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  QNA12_RS15125 (QNA12_15125) alaS 3345932..3348559 (-) 2628 WP_264498100.1 alanine--tRNA ligase -
  QNA12_RS15130 (QNA12_15130) recX 3348699..3349175 (-) 477 WP_264498099.1 recombination regulator RecX -
  QNA12_RS15135 (QNA12_15135) recA 3349221..3350291 (-) 1071 WP_264498098.1 recombinase RecA Machinery gene
  QNA12_RS15140 (QNA12_15140) pncC 3350399..3350893 (-) 495 WP_264498097.1 nicotinamide-nucleotide amidase -
  QNA12_RS15145 (QNA12_15145) - 3351099..3351434 (-) 336 WP_264498096.1 hypothetical protein -
  QNA12_RS15150 (QNA12_15150) - 3351751..3352239 (+) 489 WP_264498095.1 SRPBCC family protein -
  QNA12_RS15155 (QNA12_15155) - 3352318..3352992 (+) 675 WP_264498094.1 MarC family NAAT transporter -
  QNA12_RS15160 (QNA12_15160) cspE 3353164..3353373 (-) 210 WP_005976270.1 transcription antiterminator/RNA stability regulator CspE -
  QNA12_RS15165 (QNA12_15165) - 3353608..3353952 (+) 345 Protein_2956 amino acid racemase -
  QNA12_RS15170 (QNA12_15170) - 3354402..3354779 (+) 378 WP_264498093.1 ArsC family reductase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38210.69 Da        Isoelectric Point: 4.9796

>NTDB_id=833763 QNA12_RS15135 WP_264498098.1 3349221..3350291(-) (recA) [Pectobacterium cacticida strain DPMP6]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTHGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANASNFLKENPTVAAEL
DKKLREMLLHKGNELTPAADISDTEAEFADEGKDEF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=833763 QNA12_RS15135 WP_264498098.1 3349221..3350291(-) (recA) [Pectobacterium cacticida strain DPMP6]
ATGGCTATTGATGAGAATAAACAAAAGGCACTTGCAGCAGCGCTGGGCCAAATCGAAAAGCAATTCGGTAAAGGTTCCAT
CATGCGGTTGGGCGAAGATCGCTCAATGGACGTTGAAACTATTTCTACAGGTTCGTTATCCCTTGATATCGCTTTGGGTG
CCGGTGGGTTGCCTATGGGGCGTATCGTTGAGATTTATGGCCCAGAGTCTTCCGGTAAAACGACGCTGACGTTACAGGTG
ATTGCTGCTGCTCAGCGTGAAGGCAAAACCTGTGCGTTTATCGATGCGGAGCATGCGTTGGATCCGATTTATGCGAAAAA
GCTCGGTGTGGATATCGATAATTTGTTGTGCTCTCAGCCGGATACCGGTGAGCAAGCATTGGAAATTTGTGATGCATTAA
CACGCTCGGGCGCGGTTGATGTGATCATTGTGGATTCCGTTGCGGCACTGACGCCAAAAGCCGAAATTGAAGGAGAGATC
GGTGACTCTCACATGGGGCTGGCTGCACGCATGATGAGCCAGGCTATGCGTAAATTGGCCGGTAACTTGAAACAAGCCAA
TACGCTGCTTATTTTCATTAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCTGAGACGACCACGGGGGGGA
ATGCCCTGAAGTTCTACGCCTCTGTCCGTTTGGATATTCGCCGTACTGGCGCGATTAAAGAGGGTGAGGAAGTTATTGGC
AGTGAAACCCGCGTTAAAGTCGTGAAAAATAAAGTAGCAGCGCCGTTTAAACAGGCTGAGTTCCAAATTCTGTACGGAGA
AGGCATCAATACCCATGGGGAACTGATTGATCTCGGGGTAAAACACAAGCTAATTGAGAAAGCTGGTGCCTGGTATAGCT
ATAACGGCGATAAGATCGGTCAAGGTAAAGCAAACGCCAGCAACTTTCTGAAAGAGAATCCCACGGTTGCAGCGGAGTTG
GATAAAAAATTACGTGAAATGCTGTTGCATAAAGGCAATGAGCTTACGCCAGCCGCGGACATTAGCGATACCGAAGCTGA
ATTCGCTGACGAAGGTAAAGATGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.257

96.348

0.812
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.257

96.348

0.812
  recA Pseudomonas stutzeri DSM 10701

73.121

97.191

0.711
  recA Glaesserella parasuis strain SC1401

69.034

98.876

0.683
  recA Acinetobacter baylyi ADP1

69.942

97.191

0.68
  recA Acinetobacter baumannii D1279779

70.262

96.348

0.677
  recA Neisseria gonorrhoeae MS11

69.632

91.573

0.638
  recA Neisseria gonorrhoeae MS11

69.632

91.573

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.632

91.573

0.638
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.36

0.615
  recA Helicobacter pylori strain NCTC11637

61.584

95.787

0.59
  recA Helicobacter pylori 26695

61.29

95.787

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

59.366

97.472

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.385

91.854

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.597

94.101

0.57
  recA Lactococcus lactis subsp. cremoris KW2

62.848

90.73

0.57
  recA Streptococcus pneumoniae TIGR4

62.539

90.73

0.567
  recA Streptococcus mitis SK321

62.539

90.73

0.567
  recA Streptococcus pneumoniae Rx1

62.539

90.73

0.567
  recA Streptococcus pneumoniae D39

62.539

90.73

0.567
  recA Streptococcus pneumoniae R6

62.539

90.73

0.567
  recA Streptococcus pyogenes NZ131

62.154

91.292

0.567
  recA Streptococcus mutans UA159

61.846

91.292

0.565
  recA Streptococcus mitis NCTC 12261

61.92

90.73

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.169

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

91.573

0.531