Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QM974_RS06290 Genome accession   NZ_CP125966
Coordinates   1313076..1314119 (-) Length   347 a.a.
NCBI ID   WP_075668471.1    Uniprot ID   -
Organism   Helicobacter pylori strain H390r     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1308076..1319119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM974_RS06260 (QM974_06260) - 1308303..1309436 (+) 1134 WP_271330587.1 glycosyltransferase family 8 protein -
  QM974_RS06265 (QM974_06265) - 1309433..1310389 (-) 957 WP_271330588.1 PDC sensor domain-containing protein -
  QM974_RS06270 (QM974_06270) - 1310411..1310899 (-) 489 WP_180422707.1 shikimate kinase -
  QM974_RS06275 (QM974_06275) - 1310904..1311500 (-) 597 WP_271330589.1 AMIN domain-containing protein -
  QM974_RS06280 (QM974_06280) - 1311516..1311791 (-) 276 WP_000146213.1 hypothetical protein -
  QM974_RS06285 (QM974_06285) eno 1311784..1313064 (-) 1281 WP_271330590.1 phosphopyruvate hydratase -
  QM974_RS06290 (QM974_06290) recA 1313076..1314119 (-) 1044 WP_075668471.1 recombinase RecA Machinery gene
  QM974_RS06295 (QM974_06295) - 1314218..1315084 (+) 867 WP_271330591.1 menaquinone biosynthesis family protein -
  QM974_RS06300 (QM974_06300) - 1315081..1315848 (-) 768 WP_271330592.1 hypothetical protein -
  QM974_RS06305 (QM974_06305) - 1315936..1316517 (-) 582 WP_271330593.1 hypothetical protein -
  QM974_RS06310 (QM974_06310) - 1316529..1317113 (-) 585 WP_271330594.1 hypothetical protein -
  QM974_RS06315 (QM974_06315) - 1317214..1317420 (-) 207 WP_096464170.1 DUF4006 family protein -
  QM974_RS06320 (QM974_06320) ccoP 1317431..1318309 (-) 879 WP_000346844.1 cytochrome-c oxidase, cbb3-type subunit III -
  QM974_RS06325 (QM974_06325) - 1318311..1318529 (-) 219 WP_021299802.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37697.46 Da        Isoelectric Point: 5.7176

>NTDB_id=833743 QM974_RS06290 WP_075668471.1 1313076..1314119(-) (recA) [Helicobacter pylori strain H390r]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKVLANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=833743 QM974_RS06290 WP_075668471.1 1313076..1314119(-) (recA) [Helicobacter pylori strain H390r]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCTATTTCTACAGGCTCATTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGTAGGATCATTGAAATTTATGGACCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTTATTGACGCTGAGCATGCCCTAGATGTGCATTATGCTAAGAG
GTTGGGCGTGGATACGGAAAATTTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTCTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTCTTGCACAAGATGAA
CACTACTTTAATCTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATTGCGGCTTTAAAACAAAACGAACAGCATATT
GGAAATAGGGCTAAAGCCAAAGTGGTTAAAAATAAGGTCGCTCCACCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCAGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGTCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCGGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.135

100

0.991
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.157

95.677

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

63.914

94.236

0.602
  recA Acinetobacter baylyi ADP1

63.609

94.236

0.599
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Pseudomonas stutzeri DSM 10701

60.526

98.559

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53