Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | QNH97_RS05830 | Genome accession | NZ_CP125957 |
| Coordinates | 1315884..1316936 (+) | Length | 350 a.a. |
| NCBI ID | WP_283555997.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. G2-4 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1285590..1321448 | 1315884..1316936 | within | 0 |
Gene organization within MGE regions
Location: 1285590..1321448
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QNH97_RS05655 (QNH97_05655) | - | 1285590..1286486 (-) | 897 | WP_025212131.1 | LysR substrate-binding domain-containing protein | - |
| QNH97_RS05660 (QNH97_05660) | - | 1286594..1287706 (+) | 1113 | WP_123342531.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| QNH97_RS05665 (QNH97_05665) | fghA | 1287715..1288560 (+) | 846 | WP_283555971.1 | S-formylglutathione hydrolase | - |
| QNH97_RS05670 (QNH97_05670) | ispF | 1288604..1289077 (+) | 474 | WP_283555972.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| QNH97_RS05675 (QNH97_05675) | truD | 1289074..1290132 (+) | 1059 | WP_283555973.1 | tRNA pseudouridine(13) synthase TruD | - |
| QNH97_RS05680 (QNH97_05680) | surE | 1290120..1290869 (+) | 750 | WP_283555974.1 | 5'/3'-nucleotidase SurE | - |
| QNH97_RS05685 (QNH97_05685) | - | 1290911..1291546 (+) | 636 | WP_170862085.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| QNH97_RS05690 (QNH97_05690) | - | 1291758..1292606 (+) | 849 | WP_283555975.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| QNH97_RS05695 (QNH97_05695) | rpoS | 1292713..1293720 (+) | 1008 | WP_003198289.1 | RNA polymerase sigma factor RpoS | - |
| QNH97_RS05700 (QNH97_05700) | fdxA | 1294231..1294554 (-) | 324 | WP_207283723.1 | ferredoxin FdxA | - |
| QNH97_RS05705 (QNH97_05705) | mutS | 1294697..1297264 (-) | 2568 | WP_283555976.1 | DNA mismatch repair protein MutS | - |
| QNH97_RS05710 (QNH97_05710) | - | 1298341..1298694 (-) | 354 | WP_283555977.1 | DUF6124 family protein | - |
| QNH97_RS05715 (QNH97_05715) | - | 1299320..1300054 (+) | 735 | WP_283557431.1 | XRE family transcriptional regulator | - |
| QNH97_RS05720 (QNH97_05720) | - | 1300521..1300703 (+) | 183 | WP_283555978.1 | Com family DNA-binding transcriptional regulator | - |
| QNH97_RS05725 (QNH97_05725) | - | 1300724..1301368 (+) | 645 | WP_283555979.1 | hypothetical protein | - |
| QNH97_RS05730 (QNH97_05730) | - | 1301418..1301768 (+) | 351 | WP_025212143.1 | phage holin family protein | - |
| QNH97_RS05735 (QNH97_05735) | - | 1301805..1302317 (+) | 513 | WP_283555980.1 | hypothetical protein | - |
| QNH97_RS05740 (QNH97_05740) | - | 1302321..1302932 (+) | 612 | WP_283555981.1 | phage baseplate assembly protein V | - |
| QNH97_RS05745 (QNH97_05745) | - | 1302943..1303275 (+) | 333 | WP_283555982.1 | phage baseplate protein | - |
| QNH97_RS05750 (QNH97_05750) | - | 1303272..1304267 (+) | 996 | WP_283555983.1 | baseplate J/gp47 family protein | - |
| QNH97_RS05755 (QNH97_05755) | - | 1304264..1304899 (+) | 636 | WP_283555984.1 | phage tail protein I | - |
| QNH97_RS05760 (QNH97_05760) | - | 1304900..1307050 (+) | 2151 | WP_283555985.1 | phage tail protein | - |
| QNH97_RS05765 (QNH97_05765) | - | 1307044..1307454 (+) | 411 | WP_283555986.1 | phage tail assembly chaperone | - |
| QNH97_RS05770 (QNH97_05770) | - | 1307554..1307763 (+) | 210 | WP_283555987.1 | hypothetical protein | - |
| QNH97_RS05775 (QNH97_05775) | - | 1307766..1308932 (+) | 1167 | WP_283555988.1 | phage tail protein | - |
| QNH97_RS05780 (QNH97_05780) | - | 1308932..1309438 (+) | 507 | WP_212797342.1 | phage major tail tube protein | - |
| QNH97_RS05785 (QNH97_05785) | - | 1309591..1310181 (+) | 591 | WP_283555989.1 | phage tail assembly protein | - |
| QNH97_RS05790 (QNH97_05790) | - | 1310178..1310303 (+) | 126 | WP_038436473.1 | hypothetical protein | - |
| QNH97_RS05795 (QNH97_05795) | - | 1310361..1312460 (+) | 2100 | WP_350356196.1 | phage tail tape measure protein | - |
| QNH97_RS05800 (QNH97_05800) | - | 1312460..1312843 (+) | 384 | WP_283555991.1 | phage tail protein | - |
| QNH97_RS05805 (QNH97_05805) | - | 1312836..1313048 (+) | 213 | WP_283555992.1 | tail protein X | - |
| QNH97_RS05810 (QNH97_05810) | - | 1313058..1314074 (+) | 1017 | WP_283555993.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| QNH97_RS05815 (QNH97_05815) | - | 1314147..1314710 (+) | 564 | WP_283555994.1 | glycoside hydrolase family 19 protein | - |
| QNH97_RS05820 (QNH97_05820) | - | 1314692..1315228 (+) | 537 | WP_283555995.1 | lysis system i-spanin subunit Rz | - |
| QNH97_RS05825 (QNH97_05825) | - | 1315300..1315800 (+) | 501 | WP_283555996.1 | CinA family protein | - |
| QNH97_RS05830 (QNH97_05830) | recA | 1315884..1316936 (+) | 1053 | WP_283555997.1 | recombinase RecA | Machinery gene |
| QNH97_RS05835 (QNH97_05835) | recX | 1316945..1317412 (+) | 468 | WP_283555998.1 | recombination regulator RecX | - |
| QNH97_RS05840 (QNH97_05840) | - | 1317459..1318577 (-) | 1119 | WP_283555999.1 | TIGR00730 family Rossman fold protein | - |
| QNH97_RS05845 (QNH97_05845) | - | 1319032..1319226 (+) | 195 | WP_283556000.1 | hypothetical protein | - |
| QNH97_RS05850 (QNH97_05850) | - | 1319227..1319649 (-) | 423 | WP_135843980.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| QNH97_RS05855 (QNH97_05855) | - | 1319834..1320580 (+) | 747 | WP_283556001.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| QNH97_RS05860 (QNH97_05860) | erdR | 1320795..1321448 (+) | 654 | WP_283556002.1 | response regulator transcription factor ErdR | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37274.77 Da Isoelectric Point: 5.5226
>NTDB_id=833657 QNH97_RS05830 WP_283555997.1 1315884..1316936(+) (recA) [Pseudomonas sp. G2-4]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAATLEK
QLRDKLLSPVADVKAVANRETVDDLADADL
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAATLEK
QLRDKLLSPVADVKAVANRETVDDLADADL
Nucleotide
Download Length: 1053 bp
>NTDB_id=833657 QNH97_RS05830 WP_283555997.1 1315884..1316936(+) (recA) [Pseudomonas sp. G2-4]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCGCTTGGCATCGGCG
GCCTGCCCAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCGGGTAAAACCACACTGACCCTGTCCGTGATCGCC
CAGGCTCAAAAAGCTGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAACTGGG
TGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCGGTCGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTGCCAAAAGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCTTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTTGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGCCTGGACATCCGCCGTACTGGCGCGGTGAAGGAAGGTGATGAGGTTGTCGGCAGCGAG
ACCCGTGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCTGAATTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGTGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTCGAGAAATCTGGCGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAGTTGCCGCAACCCTCGAGAAG
CAACTGCGTGACAAGCTGCTGAGCCCGGTGGCCGACGTCAAGGCAGTGGCCAATCGCGAAACCGTTGATGACCTGGCTGA
CGCTGATCTCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCGCTTGGCATCGGCG
GCCTGCCCAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCGGGTAAAACCACACTGACCCTGTCCGTGATCGCC
CAGGCTCAAAAAGCTGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAACTGGG
TGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCGGTCGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTGCCAAAAGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCTTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTTGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGCCTGGACATCCGCCGTACTGGCGCGGTGAAGGAAGGTGATGAGGTTGTCGGCAGCGAG
ACCCGTGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCTGAATTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGTGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTCGAGAAATCTGGCGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAGTTGCCGCAACCCTCGAGAAG
CAACTGCGTGACAAGCTGCTGAGCCCGGTGGCCGACGTCAAGGCAGTGGCCAATCGCGAAACCGTTGATGACCTGGCTGA
CGCTGATCTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.