Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QMY55_RS24425 Genome accession   NZ_CP125947
Coordinates   5230787..5231908 (-) Length   373 a.a.
NCBI ID   WP_283486664.1    Uniprot ID   -
Organism   Comamonas resistens strain ZM22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5225787..5236908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY55_RS24405 (QMY55_24405) yddG 5227161..5228096 (+) 936 WP_283486660.1 aromatic amino acid DMT transporter YddG -
  QMY55_RS24410 (QMY55_24410) - 5228083..5229318 (+) 1236 WP_283486661.1 DUF4010 domain-containing protein -
  QMY55_RS24415 (QMY55_24415) - 5229328..5230053 (-) 726 WP_283486662.1 hypothetical protein -
  QMY55_RS24420 (QMY55_24420) recX 5230089..5230571 (-) 483 WP_283486663.1 recombination regulator RecX -
  QMY55_RS24425 (QMY55_24425) recA 5230787..5231908 (-) 1122 WP_283486664.1 recombinase RecA Machinery gene
  QMY55_RS24430 (QMY55_24430) - 5232046..5232537 (+) 492 WP_283486665.1 MarR family winged helix-turn-helix transcriptional regulator -
  QMY55_RS24435 (QMY55_24435) - 5232626..5233303 (+) 678 WP_283486666.1 response regulator transcription factor -
  QMY55_RS24440 (QMY55_24440) - 5233401..5234843 (+) 1443 WP_283486667.1 sensor histidine kinase -
  QMY55_RS24445 (QMY55_24445) - 5235058..5236035 (+) 978 WP_283486668.1 tripartite tricarboxylate transporter substrate binding protein -
  QMY55_RS24450 (QMY55_24450) - 5236143..5236907 (-) 765 WP_283486669.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39590.41 Da        Isoelectric Point: 5.0922

>NTDB_id=833650 QMY55_RS24425 WP_283486664.1 5230787..5231908(-) (recA) [Comamonas resistens strain ZM22]
MNAIAKNTTADNSEKAKALAAALAQIEKQFGKGTIMKLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSEVLISQPDTGEQALEICDSLVRSGAVDLIVVDSVAALT
PKAEIEGDMGDQLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGT
IKKGDEAIGNETKVKVVKNKVSPPFKVAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLR
ENPALAVEIENKVRESLGIALLPVAAGEEAAKPAKGKKADKNSAVDEDGVIQA

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=833650 QMY55_RS24425 WP_283486664.1 5230787..5231908(-) (recA) [Comamonas resistens strain ZM22]
ATGAACGCCATTGCCAAGAACACCACCGCCGACAACAGCGAAAAAGCCAAAGCGCTGGCAGCCGCCCTGGCCCAGATCGA
AAAGCAGTTCGGCAAGGGCACGATCATGAAGCTGGGCGAAGGTGAGGCGATCGAAGACATTCAGGTGGTTTCCACAGGCT
CCCTGGGCCTGGACATCGCCCTGGGCGTGGGCGGTTTGCCCCGTGGCCGTGTGATCGAGATCTACGGCCCCGAATCCTCG
GGCAAGACCACGCTGACGCTGCAGGTGATCGCCGAGATGCAAAAGCAGGGCGGTACCTGCGCCTTCATCGACGCCGAACA
TGCACTGGACACCAGCTATGCCCAGAAGCTGGGCGTGAACCTCAGCGAAGTGCTGATCAGCCAGCCCGACACCGGCGAGC
AGGCGCTGGAAATTTGCGACAGCCTGGTGCGTTCGGGAGCGGTGGACCTGATCGTGGTGGACTCGGTGGCGGCTCTGACA
CCCAAGGCCGAAATCGAAGGCGATATGGGCGATCAGTTGCCCGGCCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAA
GCTCACGGCCACGATCAAGAAGACCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCG
GCTCGCCCGAAACCACCACCGGCGGTAACGCGCTGAAGTTCTATGCCTCCGTGCGTCTGGACATCCGCCGCACCGGCACC
ATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCCCCCTTCAAGGT
GGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCTCGCGCGAAGGTGAAATTCTGGACATGGGCGTGAATGCCAAGATCC
TGGAAAAGTCCGGTGCCTGGTATGCCTACAACGGCGAGAAGATCGGTCAGGGCCGTGACAACTCGCGTGAATTCCTGCGT
GAGAACCCCGCACTGGCCGTCGAGATCGAAAACAAGGTGCGCGAAAGCCTGGGCATTGCCCTGCTGCCAGTGGCCGCCGG
CGAAGAAGCCGCCAAGCCCGCCAAAGGCAAGAAGGCCGACAAGAACAGCGCCGTGGACGAGGACGGTGTGATTCAGGCTT
GA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.437

89.544

0.729
  recA Neisseria gonorrhoeae MS11

71.515

88.472

0.633
  recA Neisseria gonorrhoeae strain FA1090

71.515

88.472

0.633
  recA Neisseria gonorrhoeae MS11

71.515

88.472

0.633
  recA Glaesserella parasuis strain SC1401

72.222

86.863

0.627
  recA Pseudomonas stutzeri DSM 10701

70.859

87.399

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.358

89.812

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.245

87.399

0.614
  recA Vibrio cholerae strain A1552

70.245

87.399

0.614
  recA Acinetobacter baylyi ADP1

69.939

87.399

0.611
  recA Acinetobacter baumannii D1279779

69.939

87.399

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.477

88.204

0.595
  recA Helicobacter pylori 26695

65.152

88.472

0.576
  recA Helicobacter pylori strain NCTC11637

65.152

88.472

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

87.668

0.571
  recA Streptococcus pneumoniae TIGR4

58.402

97.319

0.568
  recA Streptococcus pneumoniae Rx1

58.402

97.319

0.568
  recA Streptococcus pneumoniae D39

58.402

97.319

0.568
  recA Streptococcus pneumoniae R6

58.402

97.319

0.568
  recA Streptococcus mitis SK321

58.774

96.247

0.566
  recA Streptococcus mitis NCTC 12261

58.496

96.247

0.563
  recA Streptococcus mutans UA159

57.692

97.587

0.563
  recA Streptococcus pyogenes NZ131

62.614

88.204

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

62.121

88.472

0.55
  recA Lactococcus lactis subsp. cremoris KW2

61.329

88.74

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.42

86.863

0.534