Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | QMY43_RS01300 | Genome accession | NZ_CP125856 |
| Coordinates | 264269..265312 (+) | Length | 347 a.a. |
| NCBI ID | WP_005478550.1 | Uniprot ID | Q87LR1 |
| Organism | Vibrio parahaemolyticus strain G855 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 227395..265903 | 264269..265312 | within | 0 |
Gene organization within MGE regions
Location: 227395..265903
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMY43_RS01125 (QMY43_01125) | - | 227395..228318 (+) | 924 | WP_005455560.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| QMY43_RS01130 (QMY43_01130) | rpoS | 228399..229388 (+) | 990 | WP_005478537.1 | RNA polymerase sigma factor RpoS | Regulator |
| QMY43_RS01135 (QMY43_01135) | mutS | 229468..232053 (-) | 2586 | WP_159408075.1 | DNA mismatch repair protein MutS | - |
| QMY43_RS01140 (QMY43_01140) | - | 232226..233566 (+) | 1341 | WP_114867860.1 | site-specific integrase | - |
| QMY43_RS01145 (QMY43_01145) | - | 233638..234669 (+) | 1032 | WP_162999012.1 | IS630 family transposase | - |
| QMY43_RS01150 (QMY43_01150) | - | 234757..235553 (+) | 797 | Protein_198 | IS5 family transposase | - |
| QMY43_RS01155 (QMY43_01155) | - | 235610..236623 (-) | 1014 | WP_122020040.1 | hypothetical protein | - |
| QMY43_RS01160 (QMY43_01160) | - | 237028..237696 (+) | 669 | WP_159408266.1 | inovirus Gp2 family protein | - |
| QMY43_RS01165 (QMY43_01165) | - | 237872..238006 (+) | 135 | Protein_201 | IS4 family transposase | - |
| QMY43_RS01170 (QMY43_01170) | - | 238015..239175 (-) | 1161 | WP_122020038.1 | IS30 family transposase | - |
| QMY43_RS01175 (QMY43_01175) | - | 239177..240429 (+) | 1253 | Protein_203 | IS4 family transposase | - |
| QMY43_RS01180 (QMY43_01180) | - | 240466..241623 (-) | 1158 | WP_122020037.1 | hypothetical protein | - |
| QMY43_RS01185 (QMY43_01185) | - | 241620..242444 (-) | 825 | WP_122020036.1 | WYL domain-containing protein | - |
| QMY43_RS01190 (QMY43_01190) | - | 242558..242989 (-) | 432 | WP_039548379.1 | DUF2787 domain-containing protein | - |
| QMY43_RS01195 (QMY43_01195) | radC | 242986..243459 (-) | 474 | WP_122020035.1 | DNA repair protein RadC | - |
| QMY43_RS01200 (QMY43_01200) | - | 243605..243781 (+) | 177 | WP_025542599.1 | AlpA family transcriptional regulator | - |
| QMY43_RS01205 (QMY43_01205) | - | 243818..243994 (+) | 177 | WP_283277109.1 | AlpA family phage regulatory protein | - |
| QMY43_RS01210 (QMY43_01210) | - | 244159..244383 (+) | 225 | WP_039540862.1 | hypothetical protein | - |
| QMY43_RS01215 (QMY43_01215) | - | 244564..244878 (+) | 315 | WP_283277111.1 | DUF2787 family protein | - |
| QMY43_RS01220 (QMY43_01220) | - | 244958..245860 (+) | 903 | WP_236578134.1 | LPD25 domain-containing protein | - |
| QMY43_RS01225 (QMY43_01225) | - | 246035..246619 (+) | 585 | WP_122020033.1 | DUF2913 family protein | - |
| QMY43_RS01230 (QMY43_01230) | - | 246629..246967 (+) | 339 | WP_114867850.1 | hypothetical protein | - |
| QMY43_RS01235 (QMY43_01235) | - | 247178..247549 (+) | 372 | WP_236578135.1 | RecX family transcriptional regulator | - |
| QMY43_RS01245 (QMY43_01245) | tssI | 247972..250230 (+) | 2259 | WP_122020031.1 | type VI secretion system tip protein VgrG | - |
| QMY43_RS01250 (QMY43_01250) | - | 250212..250799 (+) | 588 | WP_140219975.1 | DUF4123 domain-containing protein | - |
| QMY43_RS01255 (QMY43_01255) | - | 250799..253339 (+) | 2541 | WP_122020029.1 | LysM domain-containing protein | - |
| QMY43_RS01260 (QMY43_01260) | - | 253394..254458 (-) | 1065 | WP_114867845.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | - |
| QMY43_RS01265 (QMY43_01265) | - | 254892..255329 (-) | 438 | WP_114867844.1 | DUF2787 family protein | - |
| QMY43_RS01270 (QMY43_01270) | - | 255822..258908 (+) | 3087 | WP_122020028.1 | type I restriction endonuclease subunit R | - |
| QMY43_RS01275 (QMY43_01275) | - | 258901..260196 (+) | 1296 | WP_122020027.1 | restriction endonuclease subunit S | - |
| QMY43_RS01280 (QMY43_01280) | - | 260193..261404 (+) | 1212 | WP_114867840.1 | AAA family ATPase | - |
| QMY43_RS01285 (QMY43_01285) | - | 261421..263061 (+) | 1641 | WP_114867839.1 | type I restriction-modification system subunit M | - |
| QMY43_RS01290 (QMY43_01290) | - | 263139..263267 (-) | 129 | Protein_225 | integrase | - |
| QMY43_RS01295 (QMY43_01295) | pncC | 263587..264069 (+) | 483 | WP_140104007.1 | nicotinamide-nucleotide amidase | - |
| QMY43_RS01300 (QMY43_01300) | recA | 264269..265312 (+) | 1044 | WP_005478550.1 | recombinase RecA | Machinery gene |
| QMY43_RS01305 (QMY43_01305) | recX | 265436..265903 (+) | 468 | WP_005455548.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 37432.91 Da Isoelectric Point: 5.1850
>NTDB_id=833004 QMY43_RS01300 WP_005478550.1 264269..265312(+) (recA) [Vibrio parahaemolyticus strain G855]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIAKTIDT
KLREMLLSPAQPEAPAAGEKPEQEEEF
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIAKTIDT
KLREMLLSPAQPEAPAAGEKPEQEEEF
Nucleotide
Download Length: 1044 bp
>NTDB_id=833004 QMY43_RS01300 WP_005478550.1 264269..265312(+) (recA) [Vibrio parahaemolyticus strain G855]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTCGAGCTTATCGCT
GCTGCACAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCACGCTCTAGATCCTGTATATGCAAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAACCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGCGCAATCGACGTAATGGTTGTTGACTCTGTTGCTGCTCTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAACGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGATGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCCGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAAGACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTGCTGCCGGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTCGAGCTTATCGCT
GCTGCACAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCACGCTCTAGATCCTGTATATGCAAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAACCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGCGCAATCGACGTAATGGTTGTTGACTCTGTTGCTGCTCTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAACGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGATGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCCGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAAGACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTGCTGCCGGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA
Similar proteins
Only experimentally validated proteins are listed.