Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LLS04_RS06445 Genome accession   NZ_CP125807
Coordinates   1299010..1300035 (+) Length   341 a.a.
NCBI ID   WP_013852836.1    Uniprot ID   -
Organism   Erysipelothrix enhydrae strain UCD-4322-04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1294010..1305035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLS04_RS06420 (LLS04_06420) recU 1295967..1296548 (-) 582 WP_323610889.1 Holliday junction resolvase RecU -
  LLS04_RS06425 (LLS04_06425) - 1296675..1296989 (+) 315 WP_013852834.1 DivIVA domain-containing protein -
  LLS04_RS06435 (LLS04_06435) - 1297456..1298385 (+) 930 WP_323610890.1 helix-turn-helix domain-containing protein -
  LLS04_RS06440 (LLS04_06440) pgsA 1298385..1298978 (+) 594 WP_323610891.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LLS04_RS06445 (LLS04_06445) recA 1299010..1300035 (+) 1026 WP_013852836.1 recombinase RecA Machinery gene
  LLS04_RS06450 (LLS04_06450) rny 1300147..1301703 (+) 1557 WP_323610892.1 ribonuclease Y -
  LLS04_RS06455 (LLS04_06455) - 1301703..1302467 (+) 765 WP_323610893.1 TIGR00282 family metallophosphoesterase -
  LLS04_RS06460 (LLS04_06460) - 1302611..1304269 (+) 1659 WP_003773289.1 ribonuclease J -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36997.35 Da        Isoelectric Point: 5.0733

>NTDB_id=832895 LLS04_RS06445 WP_013852836.1 1299010..1300035(+) (recA) [Erysipelothrix enhydrae strain UCD-4322-04]
MDNAKKDKVLDDAIKQIEKQFGKGSIMRLGDRAAVDIDAISSGSLSLDAALGIGGYPKGRIIEIYGPESSGKTTLALHAI
AEVQKAGGKAAFIDAENAIDPIYAQNLGVNIDDLILSQPDSGEQGLEIVDVLVRSGAVDLIVVDSVAALVPQAELDGEMG
DAQVGLQARMMSKAMRKLSGGMNRGECTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDIRRSEQIKQGTDIVGN
KANIKVVKNKVAPPFRATQVEIIYGKGISYIGEVIDLGVQYDFINKSGSWYSYKDEKIGQGREAVRSFLEDNPKITEEIA
AQIREIILPKREVLEKKEEKE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=832895 LLS04_RS06445 WP_013852836.1 1299010..1300035(+) (recA) [Erysipelothrix enhydrae strain UCD-4322-04]
ATGGATAACGCAAAAAAAGATAAAGTTCTTGATGATGCAATAAAACAAATCGAAAAACAATTTGGTAAGGGTTCAATTAT
GCGCTTGGGAGATCGAGCAGCGGTTGATATTGATGCTATTAGTTCAGGATCACTAAGTTTAGATGCTGCACTTGGAATTG
GCGGATACCCAAAAGGTCGTATTATTGAAATTTATGGCCCTGAATCAAGCGGTAAAACAACGCTCGCTTTGCATGCGATA
GCAGAAGTGCAAAAAGCGGGTGGTAAAGCTGCATTTATCGATGCTGAAAATGCGATTGATCCTATCTATGCTCAAAACTT
AGGCGTTAACATTGATGATTTAATTCTTTCACAACCCGATAGCGGTGAACAAGGATTGGAAATTGTGGATGTTTTGGTAC
GAAGTGGTGCGGTTGACTTAATAGTGGTTGACAGTGTTGCTGCACTTGTTCCACAAGCGGAACTTGATGGGGAAATGGGC
GATGCTCAAGTTGGTTTGCAAGCCCGGATGATGTCGAAAGCAATGCGTAAATTATCCGGAGGTATGAACCGAGGCGAGTG
TACAGCAATTTTTATTAATCAACTTCGAGAAAAAGTAGGAATTATGTTTGGTAATCCTGAAACAACACCGGGAGGTCGTG
CTTTAAAATTCTATTCTTCGGTTCGACTTGATATTCGTCGTAGTGAACAGATTAAACAAGGTACGGATATTGTCGGTAAT
AAGGCTAATATTAAAGTAGTGAAAAACAAAGTGGCTCCGCCTTTTAGAGCTACACAAGTTGAAATTATTTACGGTAAAGG
TATTAGTTATATTGGTGAAGTGATTGATTTAGGTGTTCAATATGACTTTATCAATAAAAGTGGATCATGGTATTCCTATA
AAGATGAGAAAATTGGACAAGGTCGTGAAGCAGTTCGAAGTTTTCTAGAAGATAATCCGAAGATTACAGAAGAGATTGCT
GCACAAATTCGCGAGATTATTTTACCGAAACGTGAAGTTTTAGAGAAAAAAGAGGAGAAAGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.375

93.842

0.651
  recA Streptococcus mitis NCTC 12261

68

95.308

0.648
  recA Streptococcus mitis SK321

67.692

95.308

0.645
  recA Streptococcus pneumoniae R6

67.077

95.308

0.639
  recA Streptococcus pneumoniae TIGR4

67.077

95.308

0.639
  recA Streptococcus pneumoniae Rx1

67.077

95.308

0.639
  recA Streptococcus pneumoniae D39

67.077

95.308

0.639
  recA Streptococcus mutans UA159

66.667

95.015

0.633
  recA Latilactobacillus sakei subsp. sakei 23K

66.667

95.015

0.633
  recA Streptococcus pyogenes NZ131

65.732

94.135

0.619
  recA Lactococcus lactis subsp. cremoris KW2

63.692

95.308

0.607
  recA Acinetobacter baylyi ADP1

62.424

96.774

0.604
  recA Pseudomonas stutzeri DSM 10701

62.5

96.188

0.601
  recA Acinetobacter baumannii D1279779

62.539

94.721

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.846

95.308

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

94.721

0.587
  recA Vibrio cholerae strain A1552

61.92

94.721

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.394

96.774

0.575
  recA Helicobacter pylori strain NCTC11637

58.507

98.24

0.575
  recA Helicobacter pylori 26695

58.209

98.24

0.572
  recA Neisseria gonorrhoeae MS11

60.559

94.428

0.572
  recA Neisseria gonorrhoeae strain FA1090

60.559

94.428

0.572
  recA Neisseria gonorrhoeae MS11

60.559

94.428

0.572
  recA Ralstonia pseudosolanacearum GMI1000

62.783

90.616

0.569
  recA Glaesserella parasuis strain SC1401

59.133

94.721

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.367

93.548

0.537