Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NSMS1_RS20570 Genome accession   NZ_AP023441
Coordinates   4746440..4747516 (+) Length   358 a.a.
NCBI ID   WP_224086610.1    Uniprot ID   -
Organism   Nostoc sp. MS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4741440..4752516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSMS1_RS20550 (NSMS1_40350) - 4741938..4742201 (+) 264 WP_224086606.1 hypothetical protein -
  NSMS1_RS20555 (NSMS1_40360) - 4742216..4743685 (-) 1470 WP_224086607.1 pentapeptide repeat-containing protein -
  NSMS1_RS20560 (NSMS1_40370) - 4743876..4744640 (-) 765 WP_224086608.1 pentapeptide repeat-containing protein -
  NSMS1_RS20565 (NSMS1_40380) - 4745050..4746231 (+) 1182 WP_224086609.1 FAD-dependent oxidoreductase -
  NSMS1_RS20570 (NSMS1_40390) recA 4746440..4747516 (+) 1077 WP_224086610.1 recombinase RecA Machinery gene
  NSMS1_RS20575 (NSMS1_40400) psb34 4748027..4748197 (+) 171 WP_224086611.1 photosystem II assembly protein Psb34 -
  NSMS1_RS20580 (NSMS1_40410) - 4748311..4749105 (-) 795 WP_224086612.1 PhzF family phenazine biosynthesis protein -
  NSMS1_RS20585 (NSMS1_40420) - 4749346..4749582 (+) 237 WP_224086613.1 hypothetical protein -
  NSMS1_RS20590 (NSMS1_40430) - 4749673..4751040 (+) 1368 WP_224086614.1 aminopeptidase P family protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38417.74 Da        Isoelectric Point: 4.8950

>NTDB_id=83257 NSMS1_RS20570 WP_224086610.1 4746440..4747516(+) (recA) [Nostoc sp. MS1]
MAINTDNSGKQKALTMVLNQIERSFGKGTIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HAIAEVQKEGGIAAFVDAEHALDPTYAAALGVDIANLLVSQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGVLIRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAE
QIKQQVREKLDKGAVVSANSVAKVSEEDEEDVDLEEEE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=83257 NSMS1_RS20570 WP_224086610.1 4746440..4747516(+) (recA) [Nostoc sp. MS1]
ATGGCTATCAATACCGATAATTCTGGCAAGCAAAAAGCGCTAACTATGGTACTCAACCAGATAGAGCGCAGCTTCGGTAA
AGGAACAATCATGCGCCTGGGTGATGCTACCCGGATGCGGGTAGAAACAATTTCTACCGGAGCGCTTACCTTGGATTTAG
CACTGGGTGGCGGTTTACCCAAGGGACGGGTGATTGAGATTTATGGGCCGGAAAGTTCCGGTAAAACTACCGTAGCACTC
CATGCGATCGCAGAAGTGCAGAAAGAAGGTGGCATTGCTGCTTTTGTGGATGCTGAACACGCCCTTGATCCTACATATGC
CGCAGCCTTGGGCGTAGATATCGCAAATTTGCTGGTTTCCCAACCTGACACCGGCGAATCAGCTTTAGAAATTGTCGATC
AGCTGGTGCGTTCCGCAGCAGTTGACATCGTAGTTATTGACTCAGTAGCAGCTTTGGTTCCCCGCGCAGAAATCGAAGGT
GACATGGGTGATGCCCACGTCGGCTTACAAGCAAGATTAATGAGCCAAGCTCTACGTAAAATTACTGGTAACATCGGTAA
ATCTGGTTGTACAGTAATTTTCATTAACCAGTTGCGGCAAAAAATTGGTGTTACCTACGGTAGCCCAGAAACTACAACTG
GTGGTAATGCTTTGAAATTCTATGCTTCAGTACGCTTGGACATTCGCCGGATTCAAACCTTGAAAAAAGGTACAGATGAA
TTTGGTAATAGAGTCAAAGTCAAAGTTGCTAAAAATAAAGTTGCACCGCCTTTTAGAATTGCGGAATTTGACATTATTTT
TGGTAAAGGTGTTTCTACACTAGGTTGTTTAGTAGACTTGGCTGAAGAAACTGGTGTCCTCATCCGTAAAGGTGCATGGT
ACAGTTACAACGGCGATAACATTTCTCAAGGTCGAGATAATGCGATTAAATATCTAGAAGAAAAGCCAGAATTTGCTGAA
CAAATTAAGCAACAAGTACGGGAGAAATTAGACAAAGGCGCTGTAGTTTCTGCCAACTCTGTAGCTAAAGTTAGTGAAGA
AGATGAAGAAGATGTTGATTTAGAGGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.818

98.045

0.626
  recA Acinetobacter baumannii D1279779

63.977

96.927

0.62
  recA Pseudomonas stutzeri DSM 10701

63.584

96.648

0.615
  recA Ralstonia pseudosolanacearum GMI1000

64.458

92.737

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

62.651

92.737

0.581
  recA Glaesserella parasuis strain SC1401

59.312

97.486

0.578
  recA Neisseria gonorrhoeae MS11

63.438

89.385

0.567
  recA Neisseria gonorrhoeae MS11

63.438

89.385

0.567
  recA Neisseria gonorrhoeae strain FA1090

63.438

89.385

0.567
  recA Helicobacter pylori strain NCTC11637

61.145

92.737

0.567
  recA Helicobacter pylori 26695

61.145

92.737

0.567
  recA Streptococcus mitis SK321

56.546

100

0.567
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.551

96.369

0.564
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

89.944

0.564
  recA Vibrio cholerae strain A1552

62.733

89.944

0.564
  recA Streptococcus pneumoniae Rx1

56.941

98.603

0.561
  recA Streptococcus pneumoniae D39

56.941

98.603

0.561
  recA Streptococcus pneumoniae R6

56.941

98.603

0.561
  recA Streptococcus pneumoniae TIGR4

56.941

98.603

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

58.824

94.972

0.559
  recA Streptococcus mutans UA159

57.637

96.927

0.559
  recA Streptococcus mitis NCTC 12261

56.215

98.883

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

92.458

0.556
  recA Streptococcus pyogenes NZ131

56.41

98.045

0.553
  recA Lactococcus lactis subsp. cremoris KW2

58.824

90.223

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

92.458

0.531

Multiple sequence alignment