Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QMO72_RS08190 Genome accession   NZ_CP125718
Coordinates   1685640..1686686 (-) Length   348 a.a.
NCBI ID   WP_069824217.1    Uniprot ID   -
Organism   Staphylococcus casei strain DSM 15096     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1680640..1691686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO72_RS08175 (QMO72_08175) - 1682407..1683195 (-) 789 WP_103266935.1 TIGR00282 family metallophosphoesterase -
  QMO72_RS08180 (QMO72_08180) - 1683366..1683581 (+) 216 WP_046836282.1 hypothetical protein -
  QMO72_RS08185 (QMO72_08185) rny 1683740..1685299 (-) 1560 WP_046836281.1 ribonuclease Y -
  QMO72_RS08190 (QMO72_08190) recA 1685640..1686686 (-) 1047 WP_069824217.1 recombinase RecA Machinery gene
  QMO72_RS08195 (QMO72_08195) - 1686858..1688000 (-) 1143 WP_103266937.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  QMO72_RS08200 (QMO72_08200) pgsA 1688386..1688964 (-) 579 WP_073504582.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMO72_RS08205 (QMO72_08205) - 1688991..1689383 (-) 393 WP_103266938.1 helix-turn-helix domain-containing protein -
  QMO72_RS08210 (QMO72_08210) - 1689420..1690235 (-) 816 WP_103266939.1 DUF3388 domain-containing protein -
  QMO72_RS08215 (QMO72_08215) - 1690440..1691144 (-) 705 WP_103266941.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37821.79 Da        Isoelectric Point: 5.0133

>NTDB_id=832473 QMO72_RS08190 WP_069824217.1 1685640..1686686(-) (recA) [Staphylococcus casei strain DSM 15096]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQRNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEISEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVEQEIVDKSGAWYSYNGERMGQGKENVKTYLKENPEVKKEIDQ
KLREKLGIFDGDIEETEAEKPTTLLDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=832473 QMO72_RS08190 WP_069824217.1 1685640..1686686(-) (recA) [Staphylococcus casei strain DSM 15096]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGCGCAGTTATGAA
ATTAGGTGATAACAAAGGTCGTCGAGTTTCTAGTGTATCAAGTGGTTCTGTGACATTAGATAATGCGTTAGGTGTAGGTG
GTTACCCTAAAGGAAGAATCATCGAGATTTATGGTCCGGAAAGTTCTGGTAAGACGACAGTTGCATTGCATGCTATAGCT
GAAGTCCAAAGAAATGGTGGCGTCGCAGCATTTATCGATGCTGAACATGCATTAGATCCTGAATATGCACAAGCGTTAGG
TGTCGATATCGACAATCTATATTTATCGCAACCTGACCATGGGGAACAAGGTTTAGAAATTTCAGAGGCATTCGTCAGAA
GTGGCGCTGTTGATATTGTGGTCGTTGACTCCGTAGCTGCGTTGACTCCAAAAGCTGAAATTGAAGGTGAAATGGGTGAT
ACGCATGTTGGTTTACAAGCGCGTTTAATGTCCCAAGCCTTACGTAAACTTTCTGGTGCAATTTCGAAATCAAACACTAC
GGCAGTGTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAGTGACTCCAGGGGGACGTGCAT
TAAAATTCTATAGTTCAGTACGTTTAGAAGTACGTAGAGCAGAACAATTAAAACAAGGCCAAGATATTGTTGGTAATAGA
ACAAAAATTAAAGTAGTTAAAAACAAAGTAGCACCGCCATTTAGAGTTGCAGAAGTAGATATCATGTATGGACAAGGTAT
CTCTAAAGAAGGCGAATTGATTGATTTAGGTGTAGAACAAGAAATTGTAGATAAATCAGGTGCTTGGTACTCTTATAACG
GTGAACGTATGGGTCAAGGTAAGGAAAATGTGAAAACATACCTTAAAGAGAACCCAGAAGTCAAAAAAGAAATAGATCAA
AAATTACGTGAAAAACTCGGTATCTTTGATGGCGATATTGAAGAGACTGAAGCAGAAAAACCTACAACGCTTCTTGACGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.38

93.678

0.716
  recA Latilactobacillus sakei subsp. sakei 23K

69.253

100

0.693
  recA Streptococcus mitis SK321

64.809

97.989

0.635
  recA Streptococcus mutans UA159

64.431

98.563

0.635
  recA Streptococcus pyogenes NZ131

66.869

94.54

0.632
  recA Neisseria gonorrhoeae MS11

63.295

99.425

0.629
  recA Neisseria gonorrhoeae MS11

63.295

99.425

0.629
  recA Neisseria gonorrhoeae strain FA1090

63.295

99.425

0.629
  recA Streptococcus pneumoniae D39

65.465

95.69

0.626
  recA Streptococcus pneumoniae Rx1

65.465

95.69

0.626
  recA Streptococcus pneumoniae R6

65.465

95.69

0.626
  recA Streptococcus pneumoniae TIGR4

65.465

95.69

0.626
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.115

0.624
  recA Streptococcus mitis NCTC 12261

65.165

95.69

0.624
  recA Acinetobacter baumannii D1279779

61.782

100

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.742

94.54

0.612
  recA Acinetobacter baylyi ADP1

65.031

93.678

0.609
  recA Vibrio cholerae strain A1552

64.724

93.678

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.724

93.678

0.606
  recA Helicobacter pylori 26695

64.329

94.253

0.606
  recA Helicobacter pylori strain NCTC11637

64.024

94.253

0.603
  recA Pseudomonas stutzeri DSM 10701

61.012

96.552

0.589
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.943

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

95.402

0.572
  recA Glaesserella parasuis strain SC1401

60.681

92.816

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

91.954

0.552