Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QLH32_RS03385 Genome accession   NZ_CP125669
Coordinates   674076..675122 (+) Length   348 a.a.
NCBI ID   WP_267979733.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 669076..680122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS03355 (QLH32_03355) rpsT 669354..669620 (+) 267 WP_267979727.1 30S ribosomal protein S20 -
  QLH32_RS03360 (QLH32_03360) - 669666..670955 (-) 1290 WP_283268078.1 hypothetical protein -
  QLH32_RS03365 (QLH32_03365) - 671143..671874 (-) 732 WP_283268079.1 phosphoglycerate mutase family protein -
  QLH32_RS03370 (QLH32_03370) - 671931..672788 (-) 858 WP_283268080.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QLH32_RS03375 (QLH32_03375) - 672800..673504 (+) 705 WP_283268082.1 HAD-IA family hydrolase -
  QLH32_RS03380 (QLH32_03380) - 673488..673916 (+) 429 WP_283268083.1 S4 domain-containing protein -
  QLH32_RS03385 (QLH32_03385) recA 674076..675122 (+) 1047 WP_267979733.1 recombinase RecA Machinery gene
  QLH32_RS03390 (QLH32_03390) - 675165..675647 (+) 483 WP_283268085.1 regulatory protein RecX -
  QLH32_RS03400 (QLH32_03400) - 676081..676944 (+) 864 WP_283268086.1 YbgF trimerization domain-containing protein -
  QLH32_RS03405 (QLH32_03405) - 677007..678878 (-) 1872 WP_283268087.1 SurA N-terminal domain-containing protein -
  QLH32_RS03410 (QLH32_03410) - 679018..679290 (-) 273 WP_004759870.1 HU family DNA-binding protein -
  QLH32_RS03415 (QLH32_03415) - 679459..679914 (-) 456 WP_004807968.1 phasin family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37904.29 Da        Isoelectric Point: 5.1525

>NTDB_id=832328 QLH32_RS03385 WP_267979733.1 674076..675122(+) (recA) [Acinetobacter sp. KCTC 92772]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TRVKVVKNKMAPPFREAVFQIMYGKGTNQLGELVDLAVQQEIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAQEIEK
LIREQLLTKNNTEAAQTEDAEEPDLLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=832328 QLH32_RS03385 WP_267979733.1 674076..675122(+) (recA) [Acinetobacter sp. KCTC 92772]
ATGGATGATAATAAAAGTAAGGCGTTACAAGCTGCATTAAGCCAGATTGAAAAACAGTTTGGTAAAAATACGGTGATGCG
CCTCGGTGACAATACCGTACAGGCAGTTGAGGCTGTTTCCACAGGTTCTTTAACACTGGATATCGCACTCGGCATTGGCG
GATTACCAAAAGGCCGTATCATTGAGATTTATGGTCCTGAATCTTCAGGTAAAACCACCATGACACTACAGGCGATTGCA
CAGTGTCAAAAAAATGGTGGCACCTGTGCCTTTATTGATGCGGAGCATGCCCTAGACCCACAGTATGCGCGTAAATTAGG
TGTTGATATTGACAACCTGCTGGTATCACAGCCAGATCATGGTGAACAGGCGCTGGAAATTGCCGACATGCTGGTTCGTT
CAGGCGCAATTGACTTAATCGTTGTCGACTCTGTTGCTGCGTTAACCCCTAAAGCTGAAATTGAAGGCGAGATGGGTGAC
TCACATATGGGCTTGCAGGCACGCTTGATGAGTCAGGCATTACGTAAAATCACGGGTAATGCAAAACGTTCCAACTGTAT
GGTGATCTTCATTAACCAGATTCGTATGAAGATTGGTGTAATGTTCGGTAGCCCTGAAACCACAACTGGTGGTAACGCAC
TAAAATTCTATGCATCTGTACGTCTGGACATTCGCCGTATTGGCCAGGTTAAGGAAGGTGATGAAATTGTGGGTTCTGAA
ACCAGGGTTAAGGTCGTGAAGAACAAAATGGCGCCTCCTTTCCGTGAAGCAGTGTTCCAGATTATGTATGGCAAAGGCAC
CAATCAACTCGGTGAACTTGTAGACCTTGCGGTACAGCAGGAAATCGTACAAAAAGCGGGTGCATGGTACTCTTATCAAG
GCAATAAAATTGGTCAGGGTAAAAATAACGTGATTCGCCATTTTGAAGAAAACCCACAAATGGCTCAGGAAATTGAAAAG
CTTATTCGTGAGCAACTTCTCACCAAAAACAATACTGAAGCCGCACAAACTGAAGATGCAGAAGAACCAGACTTGTTAGA
AAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

93.123

100

0.934
  recA Acinetobacter baumannii D1279779

93.642

99.425

0.931
  recA Pseudomonas stutzeri DSM 10701

73.775

99.713

0.736
  recA Vibrio cholerae strain A1552

71.848

97.989

0.704
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.848

97.989

0.704
  recA Glaesserella parasuis strain SC1401

68.012

99.713

0.678
  recA Ralstonia pseudosolanacearum GMI1000

66.382

100

0.67
  recA Neisseria gonorrhoeae MS11

66.282

99.713

0.661
  recA Neisseria gonorrhoeae MS11

66.282

99.713

0.661
  recA Neisseria gonorrhoeae strain FA1090

66.282

99.713

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

98.563

0.612
  recA Helicobacter pylori strain NCTC11637

64.22

93.966

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

95.977

0.603
  recA Helicobacter pylori 26695

63.914

93.966

0.601
  recA Streptococcus mutans UA159

58.908

100

0.589
  recA Streptococcus mitis SK321

59.531

97.989

0.583
  recA Streptococcus mitis NCTC 12261

59.238

97.989

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

61.585

94.253

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.81

90.517

0.578
  recA Streptococcus pneumoniae Rx1

61.656

93.678

0.578
  recA Streptococcus pneumoniae D39

61.656

93.678

0.578
  recA Streptococcus pneumoniae R6

61.656

93.678

0.578
  recA Streptococcus pneumoniae TIGR4

61.656

93.678

0.578
  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575
  recA Lactococcus lactis subsp. cremoris KW2

56.716

96.264

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

92.241

0.54