Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | QFW87_RS06290 | Genome accession | NZ_CP125618 |
| Coordinates | 1406819..1407871 (+) | Length | 350 a.a. |
| NCBI ID | WP_007907270.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. PMCC200344 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1379504..1412300 | 1406819..1407871 | within | 0 |
Gene organization within MGE regions
Location: 1379504..1412300
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QFW87_RS06125 | - | 1379504..1380400 (-) | 897 | WP_283190048.1 | LysR substrate-binding domain-containing protein | - |
| QFW87_RS06130 | - | 1380508..1381620 (+) | 1113 | WP_283190049.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| QFW87_RS06135 | fghA | 1381629..1382474 (+) | 846 | WP_283183217.1 | S-formylglutathione hydrolase | - |
| QFW87_RS06140 | ispF | 1382518..1382991 (+) | 474 | WP_010462780.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| QFW87_RS06145 | truD | 1382988..1384046 (+) | 1059 | WP_283190050.1 | tRNA pseudouridine(13) synthase TruD | - |
| QFW87_RS06150 | surE | 1384034..1384783 (+) | 750 | WP_283183219.1 | 5'/3'-nucleotidase SurE | - |
| QFW87_RS06155 | - | 1384825..1385460 (+) | 636 | WP_177327881.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| QFW87_RS06160 | - | 1385672..1386529 (+) | 858 | WP_283183220.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| QFW87_RS06165 | rpoS | 1386635..1387642 (+) | 1008 | WP_054047143.1 | RNA polymerase sigma factor RpoS | - |
| QFW87_RS06170 | fdxA | 1388128..1388451 (-) | 324 | WP_283183221.1 | ferredoxin FdxA | - |
| QFW87_RS06175 | mutS | 1388594..1391173 (-) | 2580 | WP_283183222.1 | DNA mismatch repair protein MutS | - |
| QFW87_RS06180 | - | 1391385..1392119 (+) | 735 | WP_283190882.1 | XRE family transcriptional regulator | - |
| QFW87_RS06185 | - | 1392637..1393218 (+) | 582 | WP_283190051.1 | DUF642 domain-containing protein | - |
| QFW87_RS06190 | - | 1393289..1393639 (+) | 351 | WP_283190052.1 | phage holin family protein | - |
| QFW87_RS06195 | - | 1393687..1394205 (+) | 519 | WP_283190053.1 | hypothetical protein | - |
| QFW87_RS06200 | - | 1394209..1394820 (+) | 612 | WP_283190054.1 | phage baseplate assembly protein V | - |
| QFW87_RS06205 | - | 1394831..1395163 (+) | 333 | WP_283190055.1 | phage baseplate protein | - |
| QFW87_RS06210 | - | 1395160..1396155 (+) | 996 | WP_283190056.1 | baseplate J/gp47 family protein | - |
| QFW87_RS06215 | - | 1396152..1396856 (+) | 705 | WP_283190057.1 | phage tail protein I | - |
| QFW87_RS06220 | - | 1396881..1397411 (+) | 531 | WP_283190058.1 | hypothetical protein | - |
| QFW87_RS06225 | - | 1397491..1398111 (+) | 621 | WP_283190059.1 | hypothetical protein | - |
| QFW87_RS06230 | - | 1398122..1398379 (+) | 258 | WP_283190060.1 | tail fiber assembly protein | - |
| QFW87_RS06235 | - | 1398466..1398651 (+) | 186 | WP_283190061.1 | hypothetical protein | - |
| QFW87_RS06240 | - | 1398653..1399819 (+) | 1167 | WP_283190062.1 | phage tail protein | - |
| QFW87_RS06245 | - | 1399819..1400325 (+) | 507 | WP_283190063.1 | phage major tail tube protein | - |
| QFW87_RS06250 | - | 1400531..1401124 (+) | 594 | WP_283190064.1 | phage tail assembly protein | - |
| QFW87_RS06255 | - | 1401253..1403412 (+) | 2160 | WP_283190065.1 | phage tail tape measure protein | - |
| QFW87_RS06260 | - | 1403412..1403795 (+) | 384 | WP_283190066.1 | phage tail protein | - |
| QFW87_RS06265 | - | 1403788..1404000 (+) | 213 | WP_283190067.1 | tail protein X | - |
| QFW87_RS06270 | - | 1404010..1405026 (+) | 1017 | WP_283190068.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| QFW87_RS06275 | - | 1405073..1405636 (+) | 564 | WP_283190069.1 | glycoside hydrolase family 19 protein | - |
| QFW87_RS06280 | - | 1405618..1406154 (+) | 537 | WP_283190070.1 | lysis system i-spanin subunit Rz | - |
| QFW87_RS06285 | - | 1406235..1406735 (+) | 501 | WP_283190071.1 | CinA family protein | - |
| QFW87_RS06290 | recA | 1406819..1407871 (+) | 1053 | WP_007907270.1 | recombinase RecA | Machinery gene |
| QFW87_RS06295 | recX | 1407880..1408347 (+) | 468 | WP_283183240.1 | recombination regulator RecX | - |
| QFW87_RS06300 | - | 1408389..1409507 (-) | 1119 | WP_283183242.1 | TIGR00730 family Rossman fold protein | - |
| QFW87_RS06305 | - | 1409874..1410068 (+) | 195 | WP_095128071.1 | hypothetical protein | - |
| QFW87_RS06310 | - | 1410069..1410494 (-) | 426 | WP_033053929.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| QFW87_RS06315 | - | 1410684..1411418 (+) | 735 | WP_283183243.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| QFW87_RS06320 | erdR | 1411653..1412300 (+) | 648 | WP_046046272.1 | response regulator transcription factor ErdR | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37269.83 Da Isoelectric Point: 5.5328
>NTDB_id=831914 QFW87_RS06290 WP_007907270.1 1406819..1407871(+) (recA) [Pseudomonas sp. PMCC200344]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=831914 QFW87_RS06290 WP_007907270.1 1406819..1407871(+) (recA) [Pseudomonas sp. PMCC200344]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACACTGTCGGTCATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGATGCTGAACACGCCCTTGACCCTGAATACGCTGGCAAACTGGG
CGTCAACGTCGATGACCTGCTGGTTTCGCAGCCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGTTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCTCTGGTTCCAAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATACGTATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGCCGTACCGGCGCGGTGAAAGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTAGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGCAT
CTACCTCAACGGTGAGATGATCGACTTGGGTGTTCTGCACGGTTTCGTTGAGAAGTCCGGTGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCTAACTCGGCCAAGTTCCTGGCAGATAATCCGGAAATCGCCGCCAAGCTCGAGAAG
CAGCTGCGCGACAAGTTGCTGACTCCAGCGCCGGACGTCAAAGCATCGCCAGTCAAAGAGACTGCTGATGACCTGGCTGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACACTGTCGGTCATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGATGCTGAACACGCCCTTGACCCTGAATACGCTGGCAAACTGGG
CGTCAACGTCGATGACCTGCTGGTTTCGCAGCCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGTTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCTCTGGTTCCAAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATACGTATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGCCGTACCGGCGCGGTGAAAGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTAGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGCAT
CTACCTCAACGGTGAGATGATCGACTTGGGTGTTCTGCACGGTTTCGTTGAGAAGTCCGGTGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCTAACTCGGCCAAGTTCCTGGCAGATAATCCGGAAATCGCCGCCAAGCTCGAGAAG
CAGCTGCGCGACAAGTTGCTGACTCCAGCGCCGGACGTCAAAGCATCGCCAGTCAAAGAGACTGCTGATGACCTGGCTGA
CGCTGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.