Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L6418_RS09085 Genome accession   NZ_AP023423
Coordinates   1890193..1891218 (-) Length   341 a.a.
NCBI ID   WP_237246607.1    Uniprot ID   -
Organism   Sideroxyarcus emersonii strain MIZ01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1885193..1896218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6418_RS09070 (MIZ01_1856) - 1886421..1886879 (-) 459 WP_237246604.1 response regulator -
  L6418_RS09075 (MIZ01_1857) alaS 1887034..1889655 (-) 2622 WP_237246605.1 alanine--tRNA ligase -
  L6418_RS09080 (MIZ01_1858) recX 1889742..1890215 (-) 474 WP_237246606.1 recombination regulator RecX -
  L6418_RS09085 (MIZ01_1859) recA 1890193..1891218 (-) 1026 WP_237246607.1 recombinase RecA Machinery gene
  L6418_RS09090 (MIZ01_1860) - 1891303..1891794 (-) 492 WP_237246608.1 CinA family protein -
  L6418_RS09095 (MIZ01_1861) - 1891797..1892966 (-) 1170 WP_237246609.1 O-succinylhomoserine sulfhydrylase -
  L6418_RS09100 (MIZ01_1862) - 1892969..1893589 (-) 621 WP_237246610.1 FMN-binding negative transcriptional regulator -
  L6418_RS09105 (MIZ01_1863) purF 1893826..1895352 (-) 1527 WP_237246611.1 amidophosphoribosyltransferase -
  L6418_RS09110 (MIZ01_1864) - 1895387..1895866 (-) 480 WP_237246612.1 CvpA family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36483.85 Da        Isoelectric Point: 5.3381

>NTDB_id=83169 L6418_RS09085 WP_237246607.1 1890193..1891218(-) (recA) [Sideroxyarcus emersonii strain MIZ01]
MDDNKSKALAAALSQIEKQFGKGSIMRLGESEVGKDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVI
AEMQKMGGTAAFIDAEHALDPQYARKLGVKVEDLLISQPDNGEQALEIVDMLVRSGSVDVVVVDSVAALTPKAEIEGEMG
DAQMGLHARLMSQALRKLTANINRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGAIKKGDEVIGN
ETRVKVVKNKVAPPFKEANFDILYGEGISREGEIIELGVLHKIVEKSGAWYAYNGEKIGQGKDNAREFLKGNPDIAAEIE
NKVRAAVGVAALGTSEVAEEA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=83169 L6418_RS09085 WP_237246607.1 1890193..1891218(-) (recA) [Sideroxyarcus emersonii strain MIZ01]
ATGGACGACAACAAAAGCAAGGCACTCGCCGCGGCACTGAGCCAGATCGAAAAACAGTTCGGCAAGGGCTCCATCATGCG
CCTGGGCGAGAGCGAAGTCGGCAAGGACATCCAGGTCGTTTCGACCGGCTCGCTGGGGCTGGACATCGCACTGGGCGTCG
GCGGCCTGCCGCGCGGCCGCGTGATCGAAATCTACGGCCCGGAATCCTCCGGCAAAACCACGCTTACTCTGCAAGTCATC
GCCGAGATGCAAAAGATGGGCGGCACTGCCGCCTTCATCGACGCGGAACATGCGCTCGATCCGCAATACGCCAGGAAGCT
GGGCGTGAAGGTCGAAGACCTGCTGATTTCGCAGCCTGACAACGGCGAACAGGCGCTGGAGATCGTCGACATGCTGGTGC
GTTCCGGTTCCGTGGACGTGGTGGTGGTCGACTCCGTTGCCGCGCTGACGCCCAAGGCCGAGATCGAAGGCGAGATGGGC
GATGCCCAGATGGGCCTGCACGCCCGCCTGATGTCGCAGGCGTTGCGCAAGCTCACCGCAAACATCAACCGCTCCAACAC
CATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCCGAGACCACCACCGGCGGCAACG
CGCTCAAATTTTACGCCTCCGTGCGCATGGACATCCGCCGTACCGGCGCGATCAAGAAAGGCGATGAGGTCATCGGCAAC
GAGACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCCCCGTTCAAGGAAGCCAACTTCGATATCCTCTACGGCGAAGG
CATCTCGCGCGAGGGCGAGATCATCGAACTGGGCGTGCTGCACAAGATCGTCGAGAAATCGGGCGCTTGGTATGCCTATA
ACGGCGAGAAGATCGGCCAGGGCAAGGATAATGCGCGCGAGTTCCTCAAGGGCAACCCGGACATCGCTGCGGAGATCGAG
AACAAGGTGCGTGCGGCGGTCGGTGTCGCCGCCCTGGGCACAAGTGAAGTCGCAGAAGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.385

95.308

0.757
  recA Pseudomonas stutzeri DSM 10701

72.515

100

0.727
  recA Vibrio cholerae strain A1552

74.383

95.015

0.707
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.383

95.015

0.707
  recA Neisseria gonorrhoeae MS11

73.252

96.481

0.707
  recA Neisseria gonorrhoeae MS11

73.252

96.481

0.707
  recA Neisseria gonorrhoeae strain FA1090

73.252

96.481

0.707
  recA Acinetobacter baumannii D1279779

73.457

95.015

0.698
  recA Acinetobacter baylyi ADP1

73.457

95.015

0.698
  recA Glaesserella parasuis strain SC1401

72.36

94.428

0.683
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.768

96.188

0.642
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.565

97.654

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

95.601

0.63
  recA Latilactobacillus sakei subsp. sakei 23K

62.426

99.12

0.619
  recA Helicobacter pylori strain NCTC11637

63.83

96.481

0.616
  recA Helicobacter pylori 26695

63.526

96.481

0.613
  recA Streptococcus mitis NCTC 12261

61.062

99.413

0.607
  recA Streptococcus pneumoniae D39

60.882

99.707

0.607
  recA Streptococcus pneumoniae R6

60.882

99.707

0.607
  recA Streptococcus pneumoniae TIGR4

60.882

99.707

0.607
  recA Streptococcus pneumoniae Rx1

60.882

99.707

0.607
  recA Lactococcus lactis subsp. cremoris KW2

60.947

99.12

0.604
  recA Streptococcus mutans UA159

61.934

97.067

0.601
  recA Streptococcus mitis SK321

62.006

96.481

0.598
  recA Streptococcus pyogenes NZ131

61.818

96.774

0.598
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.42

95.015

0.584

Multiple sequence alignment