Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | QMK55_RS19600 | Genome accession | NZ_CP125378 |
| Coordinates | 4353335..4354393 (+) | Length | 352 a.a. |
| NCBI ID | WP_102355707.1 | Uniprot ID | A0A2N7RDE7 |
| Organism | Pseudomonas sp. P8_229 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4306165..4354872 | 4353335..4354393 | within | 0 |
Gene organization within MGE regions
Location: 4306165..4354872
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMK55_RS19315 (QMK55_19310) | - | 4306165..4307046 (+) | 882 | WP_320329764.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| QMK55_RS19320 (QMK55_19315) | rpoS | 4307152..4308162 (+) | 1011 | WP_038357938.1 | RNA polymerase sigma factor RpoS | - |
| QMK55_RS19325 (QMK55_19320) | fdxA | 4308786..4309109 (-) | 324 | WP_007908827.1 | ferredoxin FdxA | - |
| QMK55_RS19330 (QMK55_19325) | mutS | 4309273..4311816 (-) | 2544 | WP_320330268.1 | DNA mismatch repair protein MutS | - |
| QMK55_RS19335 (QMK55_19330) | - | 4311894..4312551 (-) | 658 | Protein_3803 | tyrosine-type recombinase/integrase | - |
| QMK55_RS19340 (QMK55_19335) | - | 4312967..4313332 (+) | 366 | Protein_3804 | phage tail protein | - |
| QMK55_RS19345 (QMK55_19340) | - | 4313502..4314593 (+) | 1092 | WP_320329766.1 | acyltransferase | - |
| QMK55_RS19350 (QMK55_19345) | - | 4314694..4315114 (+) | 421 | Protein_3806 | cell wall hydrolase | - |
| QMK55_RS19355 (QMK55_19350) | - | 4315114..4315602 (+) | 489 | WP_320329767.1 | lysis protein | - |
| QMK55_RS19360 (QMK55_19355) | - | 4315857..4316024 (-) | 168 | WP_320329768.1 | hypothetical protein | - |
| QMK55_RS19365 (QMK55_19360) | - | 4316035..4316745 (-) | 711 | WP_320329769.1 | zeta toxin family protein | - |
| QMK55_RS19370 (QMK55_19365) | - | 4317188..4317931 (+) | 744 | WP_320329770.1 | helix-turn-helix transcriptional regulator | - |
| QMK55_RS19375 (QMK55_19370) | - | 4318442..4318846 (+) | 405 | WP_320329771.1 | tail fiber assembly protein | - |
| QMK55_RS19380 (QMK55_19375) | - | 4318915..4319358 (+) | 444 | WP_320329772.1 | tail fiber assembly protein | - |
| QMK55_RS19385 (QMK55_19380) | - | 4319527..4319958 (+) | 432 | WP_320329773.1 | tail fiber assembly protein | - |
| QMK55_RS19390 (QMK55_19385) | - | 4320104..4320445 (+) | 342 | WP_083366861.1 | phage holin family protein | - |
| QMK55_RS19395 (QMK55_19390) | - | 4320518..4321039 (+) | 522 | WP_320329774.1 | hypothetical protein | - |
| QMK55_RS19400 (QMK55_19395) | - | 4321043..4321651 (+) | 609 | WP_102355676.1 | phage baseplate assembly protein V | - |
| QMK55_RS19405 (QMK55_19400) | - | 4321666..4321998 (+) | 333 | WP_003222189.1 | phage baseplate protein | - |
| QMK55_RS19410 (QMK55_19405) | - | 4321995..4322990 (+) | 996 | WP_320329775.1 | baseplate J/gp47 family protein | - |
| QMK55_RS19415 (QMK55_19410) | - | 4322987..4323622 (+) | 636 | WP_320329776.1 | phage tail protein I | - |
| QMK55_RS19420 (QMK55_19415) | - | 4323623..4326031 (+) | 2409 | WP_320329777.1 | phage tail protein | - |
| QMK55_RS19425 (QMK55_19420) | - | 4326034..4326462 (+) | 429 | WP_320329778.1 | phage tail assembly chaperone | - |
| QMK55_RS19430 (QMK55_19425) | - | 4326548..4326970 (+) | 423 | WP_320329779.1 | phage tail protein | - |
| QMK55_RS19435 (QMK55_19430) | - | 4327068..4327253 (+) | 186 | WP_129389913.1 | hypothetical protein | - |
| QMK55_RS19440 (QMK55_19435) | - | 4327256..4328422 (+) | 1167 | WP_320329780.1 | phage tail protein | - |
| QMK55_RS19445 (QMK55_19440) | - | 4328422..4328928 (+) | 507 | WP_320329781.1 | phage major tail tube protein | - |
| QMK55_RS19450 (QMK55_19445) | - | 4329086..4329667 (+) | 582 | WP_102355682.1 | phage tail assembly protein | - |
| QMK55_RS19455 (QMK55_19450) | - | 4329796..4332045 (+) | 2250 | WP_320329782.1 | phage tail tape measure protein | - |
| QMK55_RS19460 (QMK55_19455) | - | 4332045..4332428 (+) | 384 | WP_222016286.1 | phage tail protein | - |
| QMK55_RS19465 (QMK55_19460) | - | 4332421..4332633 (+) | 213 | WP_201135671.1 | tail protein X | - |
| QMK55_RS19470 (QMK55_19465) | - | 4332643..4333671 (+) | 1029 | WP_102355686.1 | phage tail protein | - |
| QMK55_RS19475 (QMK55_19470) | - | 4333841..4334425 (+) | 585 | WP_320329783.1 | hypothetical protein | - |
| QMK55_RS19480 (QMK55_19475) | - | 4334422..4334604 (+) | 183 | WP_003222219.1 | DUF2635 domain-containing protein | - |
| QMK55_RS19485 (QMK55_19480) | - | 4334604..4336100 (+) | 1497 | WP_320329784.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| QMK55_RS19490 (QMK55_19485) | - | 4336168..4336515 (+) | 348 | WP_007964335.1 | phage tail tube protein | - |
| QMK55_RS19495 (QMK55_19490) | - | 4336512..4336808 (+) | 297 | WP_003222226.1 | phage tail assembly protein | - |
| QMK55_RS19500 (QMK55_19495) | - | 4336939..4339059 (+) | 2121 | WP_320329785.1 | hypothetical protein | - |
| QMK55_RS19505 (QMK55_19500) | - | 4339046..4340281 (+) | 1236 | WP_320329786.1 | DNA circularization N-terminal domain-containing protein | - |
| QMK55_RS19510 (QMK55_19505) | - | 4340285..4341328 (+) | 1044 | WP_320329787.1 | phage baseplate assembly protein | - |
| QMK55_RS19515 (QMK55_19510) | - | 4341385..4341894 (+) | 510 | WP_320329788.1 | phage baseplate assembly protein V | - |
| QMK55_RS19520 (QMK55_19515) | - | 4341894..4342292 (+) | 399 | WP_103302988.1 | phage GP46 family protein | - |
| QMK55_RS19525 (QMK55_19520) | - | 4342282..4343328 (+) | 1047 | WP_320329789.1 | baseplate J/gp47 family protein | - |
| QMK55_RS19530 (QMK55_19525) | - | 4343316..4343915 (+) | 600 | WP_320329790.1 | YmfQ family protein | - |
| QMK55_RS19535 (QMK55_19530) | - | 4343929..4345080 (+) | 1152 | WP_320329791.1 | phage tail protein | - |
| QMK55_RS19540 (QMK55_19535) | - | 4345077..4345592 (+) | 516 | WP_320329792.1 | phage tail protein | - |
| QMK55_RS19545 (QMK55_19540) | - | 4345730..4346824 (+) | 1095 | WP_320329793.1 | phage tail protein | - |
| QMK55_RS19550 (QMK55_19545) | - | 4346833..4347399 (+) | 567 | WP_320329794.1 | tail fiber assembly protein | - |
| QMK55_RS19555 (QMK55_19550) | - | 4347422..4348348 (+) | 927 | WP_320329795.1 | hypothetical protein | - |
| QMK55_RS19560 (QMK55_19555) | - | 4348348..4348821 (+) | 474 | WP_102355700.1 | phage tail assembly chaperone | - |
| QMK55_RS19565 (QMK55_19560) | - | 4348821..4349708 (+) | 888 | WP_102355701.1 | gp53-like domain-containing protein | - |
| QMK55_RS19570 (QMK55_19565) | - | 4349709..4350155 (+) | 447 | WP_102355702.1 | phage tail assembly chaperone | - |
| QMK55_RS19575 (QMK55_19570) | - | 4350174..4351331 (+) | 1158 | WP_320329796.1 | hypothetical protein | - |
| QMK55_RS19580 (QMK55_19575) | - | 4351331..4351585 (+) | 255 | WP_320329797.1 | hypothetical protein | - |
| QMK55_RS19585 (QMK55_19580) | - | 4351619..4352185 (+) | 567 | WP_102355705.1 | glycoside hydrolase family 19 protein | - |
| QMK55_RS19590 (QMK55_19585) | - | 4352164..4352682 (+) | 519 | WP_320329798.1 | lysis system i-spanin subunit Rz | - |
| QMK55_RS19595 (QMK55_19590) | - | 4352751..4353251 (+) | 501 | WP_320329799.1 | CinA family protein | - |
| QMK55_RS19600 (QMK55_19595) | recA | 4353335..4354393 (+) | 1059 | WP_102355707.1 | recombinase RecA | Machinery gene |
| QMK55_RS19605 (QMK55_19600) | recX | 4354402..4354872 (+) | 471 | WP_102355708.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37462.00 Da Isoelectric Point: 5.3111
>NTDB_id=831632 QMK55_RS19600 WP_102355707.1 4353335..4354393(+) (recA) [Pseudomonas sp. P8_229]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEVAAKLEK
QLRDKLLTPAVIADSKASAVKETEDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEVAAKLEK
QLRDKLLTPAVIADSKASAVKETEDDLADADI
Nucleotide
Download Length: 1059 bp
>NTDB_id=831632 QMK55_RS19600 WP_102355707.1 4353335..4354393(+) (recA) [Pseudomonas sp. P8_229]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGGCTGGACATCGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACACTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAATGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTAGACGTGATCATCGTCGACTCCGTGGCCGCTCTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCGC
TGAAGTTCTATGCTTCGGTCCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTTGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTTGAGAAGTCCGGCGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAGTCGCAGCGAAGCTTGAGAAG
CAACTGCGTGACAAACTGCTGACACCAGCAGTGATCGCCGACTCCAAGGCTTCTGCGGTCAAAGAGACCGAAGACGACCT
GGCTGACGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGGCTGGACATCGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACACTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAATGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTAGACGTGATCATCGTCGACTCCGTGGCCGCTCTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCGC
TGAAGTTCTATGCTTCGGTCCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTTGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTTGAGAAGTCCGGCGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAGTCGCAGCGAAGCTTGAGAAG
CAACTGCGTGACAAACTGCTGACACCAGCAGTGATCGCCGACTCCAAGGCTTCTGCGGTCAAAGAGACCGAAGACGACCT
GGCTGACGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.