Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | QMK51_RS22570 | Genome accession | NZ_CP125375 |
| Coordinates | 4994349..4995401 (-) | Length | 350 a.a. |
| NCBI ID | WP_008072704.1 | Uniprot ID | J2WRX1 |
| Organism | Pseudomonas sp. P9_31 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4989859..5038817 | 4994349..4995401 | within | 0 |
Gene organization within MGE regions
Location: 4989859..5038817
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMK51_RS22540 (QMK51_22530) | erdR | 4989859..4990509 (-) | 651 | WP_258697304.1 | response regulator transcription factor ErdR | - |
| QMK51_RS22545 (QMK51_22535) | - | 4990652..4991410 (-) | 759 | WP_320391963.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| QMK51_RS22550 (QMK51_22540) | - | 4991600..4992025 (+) | 426 | WP_320391965.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| QMK51_RS22555 (QMK51_22545) | - | 4992026..4992220 (-) | 195 | WP_258697307.1 | hypothetical protein | - |
| QMK51_RS22560 (QMK51_22550) | - | 4992711..4993829 (+) | 1119 | WP_320391967.1 | TIGR00730 family Rossman fold protein | - |
| QMK51_RS22565 (QMK51_22555) | recX | 4993873..4994340 (-) | 468 | WP_007940560.1 | recombination regulator RecX | - |
| QMK51_RS22570 (QMK51_22560) | recA | 4994349..4995401 (-) | 1053 | WP_008072704.1 | recombinase RecA | Machinery gene |
| QMK51_RS22575 (QMK51_22565) | - | 4995485..4995985 (-) | 501 | WP_258697310.1 | CinA family protein | - |
| QMK51_RS22580 (QMK51_22570) | - | 4996066..4996584 (-) | 519 | WP_320391972.1 | lysis system i-spanin subunit Rz | - |
| QMK51_RS22585 (QMK51_22575) | - | 4996566..4997129 (-) | 564 | WP_320391974.1 | glycoside hydrolase family 19 protein | - |
| QMK51_RS22590 (QMK51_22580) | - | 4997133..4997537 (-) | 405 | WP_320391976.1 | phage tail assembly chaperone | - |
| QMK51_RS22595 (QMK51_22585) | - | 4997551..4998762 (-) | 1212 | WP_258697314.1 | carbohydrate binding domain-containing protein | - |
| QMK51_RS22600 (QMK51_22590) | - | 4998805..4999365 (-) | 561 | WP_320391978.1 | tail fiber assembly protein | - |
| QMK51_RS22605 (QMK51_22595) | - | 4999373..5000395 (-) | 1023 | WP_320391980.1 | phage tail protein | - |
| QMK51_RS22610 (QMK51_22600) | - | 5000532..5001047 (-) | 516 | WP_258697317.1 | phage tail protein | - |
| QMK51_RS22615 (QMK51_22605) | - | 5001044..5002195 (-) | 1152 | WP_320391982.1 | phage tail protein | - |
| QMK51_RS22620 (QMK51_22610) | - | 5002207..5002806 (-) | 600 | WP_258697319.1 | YmfQ family protein | - |
| QMK51_RS22625 (QMK51_22615) | - | 5002794..5003837 (-) | 1044 | WP_258697320.1 | baseplate J/gp47 family protein | - |
| QMK51_RS22630 (QMK51_22620) | - | 5003827..5004225 (-) | 399 | WP_123719829.1 | phage GP46 family protein | - |
| QMK51_RS22635 (QMK51_22625) | - | 5004225..5004734 (-) | 510 | WP_320391985.1 | phage baseplate assembly protein V | - |
| QMK51_RS22640 (QMK51_22630) | - | 5004878..5005921 (-) | 1044 | WP_320391987.1 | phage baseplate assembly protein | - |
| QMK51_RS22645 (QMK51_22635) | - | 5005925..5007163 (-) | 1239 | WP_320391989.1 | DNA circularization N-terminal domain-containing protein | - |
| QMK51_RS22650 (QMK51_22640) | - | 5007150..5008649 (-) | 1500 | WP_320391991.1 | phage tail protein | - |
| QMK51_RS22655 (QMK51_22645) | - | 5008649..5008834 (-) | 186 | WP_105340307.1 | hypothetical protein | - |
| QMK51_RS22660 (QMK51_22650) | - | 5008780..5009076 (-) | 297 | WP_007907223.1 | phage tail assembly protein | - |
| QMK51_RS22665 (QMK51_22655) | - | 5009073..5009420 (-) | 348 | WP_018926973.1 | phage tail tube protein | - |
| QMK51_RS22670 (QMK51_22660) | - | 5009488..5010984 (-) | 1497 | WP_320391993.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| QMK51_RS22675 (QMK51_22665) | - | 5010984..5011166 (-) | 183 | WP_003198311.1 | DUF2635 domain-containing protein | - |
| QMK51_RS22680 (QMK51_22670) | - | 5011163..5011747 (-) | 585 | WP_320391995.1 | hypothetical protein | - |
| QMK51_RS22685 (QMK51_22675) | - | 5011907..5012935 (-) | 1029 | WP_320391996.1 | phage late control D family protein | - |
| QMK51_RS22690 (QMK51_22680) | - | 5012945..5013157 (-) | 213 | WP_320391998.1 | tail protein X | - |
| QMK51_RS22695 (QMK51_22685) | - | 5013150..5013533 (-) | 384 | WP_258697329.1 | phage tail protein | - |
| QMK51_RS22700 (QMK51_22690) | - | 5013533..5015587 (-) | 2055 | WP_320392000.1 | phage tail tape measure protein | - |
| QMK51_RS22705 (QMK51_22695) | - | 5015716..5016297 (-) | 582 | WP_258697331.1 | phage tail assembly protein | - |
| QMK51_RS22710 (QMK51_22700) | - | 5016461..5016967 (-) | 507 | WP_253419256.1 | phage major tail tube protein | - |
| QMK51_RS22715 (QMK51_22705) | - | 5016967..5018133 (-) | 1167 | WP_258697332.1 | phage tail protein | - |
| QMK51_RS22720 (QMK51_22710) | - | 5018136..5018345 (-) | 210 | WP_258697333.1 | hypothetical protein | - |
| QMK51_RS22725 (QMK51_22715) | - | 5018447..5018986 (-) | 540 | WP_320392006.1 | DUF4376 domain-containing protein | - |
| QMK51_RS22730 (QMK51_22720) | - | 5018986..5021121 (-) | 2136 | WP_320392008.1 | phage tail protein | - |
| QMK51_RS22735 (QMK51_22725) | - | 5021122..5021757 (-) | 636 | WP_320392010.1 | phage tail protein I | - |
| QMK51_RS22740 (QMK51_22730) | - | 5021754..5022749 (-) | 996 | WP_320392012.1 | baseplate J/gp47 family protein | - |
| QMK51_RS22745 (QMK51_22735) | - | 5022746..5023078 (-) | 333 | WP_258697338.1 | phage baseplate protein | - |
| QMK51_RS22750 (QMK51_22740) | - | 5023089..5023700 (-) | 612 | WP_320392014.1 | phage baseplate assembly protein V | - |
| QMK51_RS22755 (QMK51_22745) | - | 5023704..5024216 (-) | 513 | WP_320392016.1 | hypothetical protein | - |
| QMK51_RS22760 (QMK51_22750) | - | 5024264..5024614 (-) | 351 | WP_008010200.1 | phage holin family protein | - |
| QMK51_RS22765 (QMK51_22755) | - | 5024738..5025298 (-) | 561 | WP_320392018.1 | DUF642 domain-containing protein | - |
| QMK51_RS22770 (QMK51_22760) | - | 5025306..5025494 (-) | 189 | WP_320394553.1 | Com family DNA-binding transcriptional regulator | - |
| QMK51_RS22775 (QMK51_22765) | - | 5026000..5026734 (-) | 735 | WP_258700787.1 | XRE family transcriptional regulator | - |
| QMK51_RS22780 (QMK51_22770) | mutS | 5026934..5029513 (+) | 2580 | WP_320392020.1 | DNA mismatch repair protein MutS | - |
| QMK51_RS22785 (QMK51_22775) | fdxA | 5029656..5029979 (+) | 324 | WP_003222178.1 | ferredoxin FdxA | - |
| QMK51_RS22790 (QMK51_22780) | rpoS | 5030613..5031620 (-) | 1008 | WP_105340288.1 | RNA polymerase sigma factor RpoS | - |
| QMK51_RS22795 (QMK51_22785) | - | 5031727..5032584 (-) | 858 | WP_258697344.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| QMK51_RS22800 (QMK51_22790) | - | 5032793..5033428 (-) | 636 | WP_173861137.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| QMK51_RS22805 (QMK51_22795) | surE | 5033467..5034219 (-) | 753 | WP_258697345.1 | 5'/3'-nucleotidase SurE | - |
| QMK51_RS22810 (QMK51_22800) | truD | 5034207..5035265 (-) | 1059 | WP_320392026.1 | tRNA pseudouridine(13) synthase TruD | - |
| QMK51_RS22815 (QMK51_22805) | ispF | 5035262..5035735 (-) | 474 | WP_018927000.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| QMK51_RS22820 (QMK51_22810) | fghA | 5035848..5036693 (-) | 846 | WP_258697347.1 | S-formylglutathione hydrolase | - |
| QMK51_RS22825 (QMK51_22815) | - | 5036702..5037814 (-) | 1113 | WP_018927002.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| QMK51_RS22830 (QMK51_22820) | - | 5037921..5038817 (+) | 897 | WP_258697348.1 | LysR substrate-binding domain-containing protein | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37255.81 Da Isoelectric Point: 5.5328
>NTDB_id=831547 QMK51_RS22570 WP_008072704.1 4994349..4995401(-) (recA) [Pseudomonas sp. P9_31]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLSPAPDVKASPVKETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLSPAPDVKASPVKETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=831547 QMK51_RS22570 WP_008072704.1 4994349..4995401(-) (recA) [Pseudomonas sp. P9_31]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACGGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACCCTGACACTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCCGCTCTGGTGCCAAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGTAT
CTACCTCAACGGTGAGATGATCGACTTGGGTGTTCTGCACGGTTTCGTCGAGAAATCCGGTGCATGGTATGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAGATCGCCGCGAAACTTGAGAAG
CAGCTGCGCGACAAATTGCTGTCTCCAGCACCGGATGTCAAAGCATCGCCGGTCAAAGAGACTGCTGACGACCTGGCTGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACGGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACCCTGACACTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCCGCTCTGGTGCCAAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGTAT
CTACCTCAACGGTGAGATGATCGACTTGGGTGTTCTGCACGGTTTCGTCGAGAAATCCGGTGCATGGTATGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAGATCGCCGCGAAACTTGAGAAG
CAGCTGCGCGACAAATTGCTGTCTCCAGCACCGGATGTCAAAGCATCGCCGGTCAAAGAGACTGCTGACGACCTGGCTGA
CGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.