Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QMK48_RS06020 Genome accession   NZ_CP125374
Coordinates   1362089..1363141 (+) Length   350 a.a.
NCBI ID   WP_018607950.1    Uniprot ID   A0A1V3SG41
Organism   Pseudomonas sp. P9_32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1357089..1368141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK48_RS05990 (QMK48_05995) - 1358087..1358596 (+) 510 WP_320389988.1 phage tail protein -
  QMK48_RS05995 (QMK48_06000) - 1358625..1359839 (+) 1215 WP_258690460.1 carbohydrate-binding protein CenC -
  QMK48_RS06000 (QMK48_06005) - 1359848..1360216 (+) 369 WP_258690461.1 phage tail assembly chaperone -
  QMK48_RS06005 (QMK48_06010) - 1360352..1360915 (+) 564 WP_258690462.1 glycoside hydrolase family 19 protein -
  QMK48_RS06010 (QMK48_06015) - 1360897..1361433 (+) 537 WP_258690463.1 lysis protein -
  QMK48_RS06015 (QMK48_06020) - 1361505..1362005 (+) 501 WP_253471950.1 CinA family protein -
  QMK48_RS06020 (QMK48_06025) recA 1362089..1363141 (+) 1053 WP_018607950.1 recombinase RecA Machinery gene
  QMK48_RS06025 (QMK48_06030) recX 1363150..1363617 (+) 468 WP_018607949.1 recombination regulator RecX -
  QMK48_RS06030 (QMK48_06035) - 1363664..1364782 (-) 1119 WP_072343282.1 TIGR00730 family Rossman fold protein -
  QMK48_RS06035 (QMK48_06040) - 1365249..1365443 (+) 195 WP_024617640.1 hypothetical protein -
  QMK48_RS06040 (QMK48_06045) - 1365444..1365866 (-) 423 WP_003198359.1 quorum-sensing-regulated virulence factor family protein -
  QMK48_RS06045 (QMK48_06050) - 1366051..1366797 (+) 747 WP_214511582.1 tRNA-uridine aminocarboxypropyltransferase -
  QMK48_RS06050 (QMK48_06055) erdR 1367010..1367663 (+) 654 WP_046064978.1 response regulator transcription factor ErdR -
  QMK48_RS06055 (QMK48_06060) - 1367736..1368098 (+) 363 WP_214511583.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37240.75 Da        Isoelectric Point: 5.5226

>NTDB_id=831503 QMK48_RS06020 WP_018607950.1 1362089..1363141(+) (recA) [Pseudomonas sp. P9_32]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKAVANREPVDDLADADI

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=831503 QMK48_RS06020 WP_018607950.1 1362089..1363141(+) (recA) [Pseudomonas sp. P9_32]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATTGCGCTTGGCATCGGCG
GCCTGCCAAAAGGCCGGATCGTTGAAATCTACGGTCCTGAATCGTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGTGCGACCTGCGCCTTCGTCGATGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAACTGGG
TGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCACTGGTGCCAAAAGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCTTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGCCTCGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAGGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCGGGCGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAGTCGCCGCCGCCCTTGAGAAG
CAACTGCGTGACAAGCTGCTGAGCCCGGTTGCAGACGTAAAGGCAGTGGCCAATCGCGAGCCCGTTGACGATCTGGCTGA
CGCTGACATCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.034

100

0.883
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.076

94

0.706
  recA Vibrio cholerae strain A1552

75.076

94

0.706
  recA Acinetobacter baylyi ADP1

73.731

95.714

0.706
  recA Glaesserella parasuis strain SC1401

71.81

96.286

0.691
  recA Acinetobacter baumannii D1279779

73.476

93.714

0.689
  recA Ralstonia pseudosolanacearum GMI1000

69.096

98

0.677
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.571

0.66
  recA Neisseria gonorrhoeae MS11

71.296

92.571

0.66
  recA Neisseria gonorrhoeae MS11

71.296

92.571

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

93.429

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

95.429

0.589
  recA Streptococcus pyogenes NZ131

56.534

100

0.569
  recA Helicobacter pylori strain NCTC11637

60.55

93.429

0.566
  recA Helicobacter pylori 26695

60.55

93.429

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

60.436

91.714

0.554
  recA Streptococcus mutans UA159

59.692

92.857

0.554
  recA Streptococcus mitis SK321

58.951

92.571

0.546
  recA Streptococcus pneumoniae TIGR4

58.104

93.429

0.543
  recA Streptococcus pneumoniae R6

58.104

93.429

0.543
  recA Streptococcus pneumoniae Rx1

58.104

93.429

0.543
  recA Streptococcus pneumoniae D39

58.104

93.429

0.543
  recA Streptococcus mitis NCTC 12261

58.333

92.571

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.714

0.537
  recA Lactococcus lactis subsp. cremoris KW2

56.966

92.286

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.793

93.714

0.523