Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | QMK48_RS06020 | Genome accession | NZ_CP125374 |
| Coordinates | 1362089..1363141 (+) | Length | 350 a.a. |
| NCBI ID | WP_018607950.1 | Uniprot ID | A0A1V3SG41 |
| Organism | Pseudomonas sp. P9_32 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1305916..1369089 | 1362089..1363141 | within | 0 |
Gene organization within MGE regions
Location: 1305916..1369089
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMK48_RS05715 (QMK48_05720) | dnaE | 1305916..1309437 (+) | 3522 | WP_253471885.1 | DNA polymerase III subunit alpha | - |
| QMK48_RS05720 (QMK48_05725) | - | 1309587..1310534 (+) | 948 | WP_003198261.1 | acetyl-CoA carboxylase carboxyltransferase subunit alpha | - |
| QMK48_RS05725 (QMK48_05730) | tilS | 1310669..1311997 (+) | 1329 | WP_320389972.1 | tRNA lysidine(34) synthetase TilS | - |
| QMK48_RS05730 (QMK48_05735) | - | 1312272..1313903 (+) | 1632 | WP_018603697.1 | CTP synthase | - |
| QMK48_RS05735 (QMK48_05740) | kdsA | 1313908..1314753 (+) | 846 | WP_253471889.1 | 3-deoxy-8-phosphooctulonate synthase | - |
| QMK48_RS05740 (QMK48_05745) | eno | 1315006..1316295 (+) | 1290 | WP_013692387.1 | phosphopyruvate hydratase | - |
| QMK48_RS05745 (QMK48_05750) | ftsB | 1316466..1316744 (+) | 279 | WP_018603692.1 | cell division protein FtsB | - |
| QMK48_RS05750 (QMK48_05755) | ispD | 1316741..1317448 (+) | 708 | WP_214511547.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| QMK48_RS05755 (QMK48_05760) | - | 1317602..1318498 (-) | 897 | WP_214511548.1 | LysR substrate-binding domain-containing protein | - |
| QMK48_RS05760 (QMK48_05765) | - | 1318606..1319718 (+) | 1113 | WP_018603686.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| QMK48_RS05765 (QMK48_05770) | fghA | 1319727..1320572 (+) | 846 | WP_253471891.1 | S-formylglutathione hydrolase | - |
| QMK48_RS05770 (QMK48_05775) | ispF | 1320616..1321089 (+) | 474 | WP_320389973.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| QMK48_RS05775 (QMK48_05780) | truD | 1321086..1322144 (+) | 1059 | WP_253471893.1 | tRNA pseudouridine(13) synthase TruD | - |
| QMK48_RS05780 (QMK48_05785) | surE | 1322132..1322881 (+) | 750 | WP_038856712.1 | 5'/3'-nucleotidase SurE | - |
| QMK48_RS05785 (QMK48_05790) | - | 1322923..1323558 (+) | 636 | WP_170862085.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| QMK48_RS05790 (QMK48_05795) | - | 1323770..1324615 (+) | 846 | WP_320389974.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| QMK48_RS05795 (QMK48_05800) | rpoS | 1324722..1325729 (+) | 1008 | WP_003198289.1 | RNA polymerase sigma factor RpoS | - |
| QMK48_RS05800 (QMK48_05805) | - | 1325987..1326112 (+) | 126 | WP_301301102.1 | hypothetical protein | - |
| QMK48_RS05805 (QMK48_05810) | fdxA | 1327154..1327477 (-) | 324 | WP_014336809.1 | ferredoxin FdxA | - |
| QMK48_RS05810 (QMK48_05815) | mutS | 1327620..1330187 (-) | 2568 | WP_214511554.1 | DNA mismatch repair protein MutS | - |
| QMK48_RS05815 (QMK48_05820) | - | 1330949..1331308 (-) | 360 | WP_320389975.1 | DUF6124 family protein | - |
| QMK48_RS05820 (QMK48_05825) | - | 1331863..1332597 (+) | 735 | WP_028237204.1 | helix-turn-helix transcriptional regulator | - |
| QMK48_RS05825 (QMK48_05830) | - | 1332973..1333161 (-) | 189 | WP_250886266.1 | hypothetical protein | - |
| QMK48_RS05830 (QMK48_05835) | - | 1333105..1333239 (+) | 135 | WP_253478418.1 | Com family DNA-binding transcriptional regulator | - |
| QMK48_RS05835 (QMK48_05840) | - | 1333259..1333903 (+) | 645 | WP_320389976.1 | hypothetical protein | - |
| QMK48_RS05840 (QMK48_05845) | - | 1333952..1334302 (+) | 351 | WP_003198302.1 | phage holin family protein | - |
| QMK48_RS05845 (QMK48_05850) | - | 1334339..1334851 (+) | 513 | WP_039010711.1 | hypothetical protein | - |
| QMK48_RS05850 (QMK48_05855) | - | 1334855..1335466 (+) | 612 | WP_214511559.1 | phage baseplate assembly protein V | - |
| QMK48_RS05855 (QMK48_05860) | - | 1335478..1335810 (+) | 333 | WP_320389977.1 | phage baseplate protein | - |
| QMK48_RS05860 (QMK48_05865) | - | 1335807..1336802 (+) | 996 | WP_320389978.1 | baseplate J/gp47 family protein | - |
| QMK48_RS05865 (QMK48_05870) | - | 1336799..1337434 (+) | 636 | WP_320389979.1 | phage tail protein I | - |
| QMK48_RS05870 (QMK48_05875) | - | 1337435..1339588 (+) | 2154 | WP_320389980.1 | phage tail protein | - |
| QMK48_RS05875 (QMK48_05880) | - | 1339599..1340000 (+) | 402 | WP_320389981.1 | phage tail assembly chaperone | - |
| QMK48_RS05880 (QMK48_05885) | - | 1340092..1340301 (+) | 210 | WP_320389982.1 | hypothetical protein | - |
| QMK48_RS05885 (QMK48_05890) | - | 1340304..1341470 (+) | 1167 | WP_018607964.1 | phage tail sheath protein FI | - |
| QMK48_RS05890 (QMK48_05895) | - | 1341470..1341976 (+) | 507 | WP_258690449.1 | phage major tail tube protein | - |
| QMK48_RS05895 (QMK48_05900) | - | 1342128..1342694 (+) | 567 | WP_258690450.1 | phage tail assembly protein | - |
| QMK48_RS05900 (QMK48_05905) | - | 1342823..1344994 (+) | 2172 | WP_253471922.1 | phage tail tape measure protein | - |
| QMK48_RS05905 (QMK48_05910) | - | 1344994..1345377 (+) | 384 | WP_320389983.1 | phage tail protein | - |
| QMK48_RS05910 (QMK48_05915) | - | 1345370..1345582 (+) | 213 | WP_058542798.1 | tail protein X | - |
| QMK48_RS05915 (QMK48_05920) | - | 1345592..1346608 (+) | 1017 | WP_258690451.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| QMK48_RS05925 (QMK48_05930) | - | 1347162..1347746 (+) | 585 | WP_024618256.1 | hypothetical protein | - |
| QMK48_RS05930 (QMK48_05935) | - | 1347743..1347925 (+) | 183 | WP_003198311.1 | DUF2635 domain-containing protein | - |
| QMK48_RS05935 (QMK48_05940) | - | 1347925..1349418 (+) | 1494 | WP_320389984.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| QMK48_RS05940 (QMK48_05945) | - | 1349606..1349953 (+) | 348 | WP_003198314.1 | phage tail tube protein | - |
| QMK48_RS05945 (QMK48_05950) | - | 1349950..1350246 (+) | 297 | WP_003198316.1 | phage tail assembly protein | - |
| QMK48_RS05950 (QMK48_05955) | - | 1350377..1351951 (+) | 1575 | WP_320389985.1 | phage tail protein | - |
| QMK48_RS05955 (QMK48_05960) | - | 1351938..1353176 (+) | 1239 | WP_253471934.1 | DNA circularization protein | - |
| QMK48_RS05960 (QMK48_05965) | - | 1353180..1354220 (+) | 1041 | WP_320389986.1 | phage baseplate assembly protein | - |
| QMK48_RS05965 (QMK48_05970) | - | 1354401..1354910 (+) | 510 | WP_028237198.1 | phage baseplate assembly protein V | - |
| QMK48_RS05970 (QMK48_05975) | - | 1354910..1355308 (+) | 399 | WP_079303617.1 | phage GP46 family protein | - |
| QMK48_RS05975 (QMK48_05980) | - | 1355298..1356338 (+) | 1041 | WP_253471938.1 | baseplate J/gp47 family protein | - |
| QMK48_RS05980 (QMK48_05985) | - | 1356326..1356925 (+) | 600 | WP_024617650.1 | YmfQ family protein | - |
| QMK48_RS05985 (QMK48_05990) | - | 1356936..1358090 (+) | 1155 | WP_320389987.1 | phage tail protein | - |
| QMK48_RS05990 (QMK48_05995) | - | 1358087..1358596 (+) | 510 | WP_320389988.1 | phage tail protein | - |
| QMK48_RS05995 (QMK48_06000) | - | 1358625..1359839 (+) | 1215 | WP_258690460.1 | carbohydrate-binding protein CenC | - |
| QMK48_RS06000 (QMK48_06005) | - | 1359848..1360216 (+) | 369 | WP_258690461.1 | phage tail assembly chaperone | - |
| QMK48_RS06005 (QMK48_06010) | - | 1360352..1360915 (+) | 564 | WP_258690462.1 | glycoside hydrolase family 19 protein | - |
| QMK48_RS06010 (QMK48_06015) | - | 1360897..1361433 (+) | 537 | WP_258690463.1 | lysis protein | - |
| QMK48_RS06015 (QMK48_06020) | - | 1361505..1362005 (+) | 501 | WP_253471950.1 | CinA family protein | - |
| QMK48_RS06020 (QMK48_06025) | recA | 1362089..1363141 (+) | 1053 | WP_018607950.1 | recombinase RecA | Machinery gene |
| QMK48_RS06025 (QMK48_06030) | recX | 1363150..1363617 (+) | 468 | WP_018607949.1 | recombination regulator RecX | - |
| QMK48_RS06030 (QMK48_06035) | - | 1363664..1364782 (-) | 1119 | WP_072343282.1 | TIGR00730 family Rossman fold protein | - |
| QMK48_RS06035 (QMK48_06040) | - | 1365249..1365443 (+) | 195 | WP_024617640.1 | hypothetical protein | - |
| QMK48_RS06040 (QMK48_06045) | - | 1365444..1365866 (-) | 423 | WP_003198359.1 | quorum-sensing-regulated virulence factor family protein | - |
| QMK48_RS06045 (QMK48_06050) | - | 1366051..1366797 (+) | 747 | WP_214511582.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| QMK48_RS06050 (QMK48_06055) | erdR | 1367010..1367663 (+) | 654 | WP_046064978.1 | response regulator transcription factor ErdR | - |
| QMK48_RS06055 (QMK48_06060) | - | 1367736..1368098 (+) | 363 | WP_214511583.1 | diacylglycerol kinase | - |
| QMK48_RS06060 (QMK48_06065) | - | 1368103..1369029 (-) | 927 | WP_003198364.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37240.75 Da Isoelectric Point: 5.5226
>NTDB_id=831503 QMK48_RS06020 WP_018607950.1 1362089..1363141(+) (recA) [Pseudomonas sp. P9_32]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKAVANREPVDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKAVANREPVDDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=831503 QMK48_RS06020 WP_018607950.1 1362089..1363141(+) (recA) [Pseudomonas sp. P9_32]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATTGCGCTTGGCATCGGCG
GCCTGCCAAAAGGCCGGATCGTTGAAATCTACGGTCCTGAATCGTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGTGCGACCTGCGCCTTCGTCGATGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAACTGGG
TGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCACTGGTGCCAAAAGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCTTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGCCTCGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAGGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCGGGCGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAGTCGCCGCCGCCCTTGAGAAG
CAACTGCGTGACAAGCTGCTGAGCCCGGTTGCAGACGTAAAGGCAGTGGCCAATCGCGAGCCCGTTGACGATCTGGCTGA
CGCTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATTGCGCTTGGCATCGGCG
GCCTGCCAAAAGGCCGGATCGTTGAAATCTACGGTCCTGAATCGTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGTGCGACCTGCGCCTTCGTCGATGCCGAACACGCCCTGGACCCGGAATACGCCGGCAAACTGGG
TGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCACTGGTGCCAAAAGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCTTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGCCTCGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAGGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCGGGCGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAGTCGCCGCCGCCCTTGAGAAG
CAACTGCGTGACAAGCTGCTGAGCCCGGTTGCAGACGTAAAGGCAGTGGCCAATCGCGAGCCCGTTGACGATCTGGCTGA
CGCTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.