Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KJS28_RS01160 Genome accession   NZ_AP023418
Coordinates   227766..228872 (-) Length   368 a.a.
NCBI ID   WP_021858609.1    Uniprot ID   -
Organism   Vescimonas coprocola strain MM50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 222766..233872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJS28_RS01135 (MM50RIKEN_02210) - 224079..224309 (-) 231 WP_213541407.1 helix-turn-helix domain-containing protein -
  KJS28_RS01140 (MM50RIKEN_02220) - 224422..225009 (+) 588 WP_213541408.1 DUF5067 domain-containing protein -
  KJS28_RS01145 (MM50RIKEN_02230) pgsA 225092..225616 (-) 525 WP_213542198.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KJS28_RS01150 (MM50RIKEN_02240) rimO 225627..226964 (-) 1338 WP_213541409.1 30S ribosomal protein S12 methylthiotransferase RimO -
  KJS28_RS01155 (MM50RIKEN_02250) - 227156..227776 (-) 621 WP_213541410.1 regulatory protein RecX -
  KJS28_RS01160 (MM50RIKEN_02260) recA 227766..228872 (-) 1107 WP_021858609.1 recombinase RecA Machinery gene
  KJS28_RS01165 (MM50RIKEN_02270) prmC 228954..229832 (-) 879 WP_213541411.1 peptide chain release factor N(5)-glutamine methyltransferase -
  KJS28_RS01170 (MM50RIKEN_02280) - 229888..230835 (-) 948 WP_213541412.1 DUF1385 domain-containing protein -
  KJS28_RS01175 (MM50RIKEN_02290) - 230903..232330 (-) 1428 WP_213541413.1 HAMP domain-containing sensor histidine kinase -
  KJS28_RS01180 (MM50RIKEN_02300) - 232359..233045 (-) 687 WP_213541414.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39666.42 Da        Isoelectric Point: 6.0853

>NTDB_id=83139 KJS28_RS01160 WP_021858609.1 227766..228872(-) (recA) [Vescimonas coprocola strain MM50]
MAAKKDSSIAAPVVSDKKKALETAMQQIEKTYGKGSIMRYGDNVQPNVEAIPTGSLALDLALGIGGVPRGRIIEIYGPES
SGKTTLALHVLAQAQKMGGEVAFVDAEHALDPTYARALGVKIEDMLISQPDTGEQALEITEALVRSGAIDVVVVDSVAAL
VPRAEIEGEMGDSFVGLHARLMSQALRKLTGIIAKTNTVVIFINQLREKVGVMYGNPEVTTGGRALKFYASVRIDVRRIE
TLKSGGEMIGNRTRAKVVKNKVAPPFREAEFDIMYGEGISKLGEMLDLGVKLDLVQKSGSWFNMGEVRLGQGRDAAKQYL
RDHPDEADALEANIRRDFHKLMSNQSKVAARAAGRAVDVSADDFDDAD

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=83139 KJS28_RS01160 WP_021858609.1 227766..228872(-) (recA) [Vescimonas coprocola strain MM50]
ATGGCAGCGAAGAAAGACAGCTCGATAGCTGCTCCCGTGGTCTCCGACAAGAAAAAGGCGCTGGAGACCGCCATGCAGCA
AATCGAAAAAACCTACGGCAAGGGCTCTATCATGCGCTACGGCGACAATGTGCAGCCCAATGTGGAGGCTATCCCCACCG
GCTCTCTGGCGCTGGATCTGGCGCTGGGCATCGGCGGCGTACCCCGTGGCCGCATCATCGAGATCTATGGGCCTGAGTCC
TCCGGTAAGACCACGCTGGCTCTGCACGTTCTGGCGCAGGCCCAGAAAATGGGCGGCGAGGTGGCCTTCGTGGATGCCGA
GCACGCTCTGGATCCCACCTATGCCCGTGCGCTGGGGGTGAAGATCGAGGATATGCTCATCTCCCAGCCGGACACCGGTG
AGCAGGCGCTGGAGATCACCGAGGCGCTGGTGCGCTCCGGGGCCATCGACGTGGTGGTGGTGGACTCCGTGGCCGCTCTG
GTCCCCCGTGCCGAGATCGAGGGTGAGATGGGTGACAGCTTCGTGGGGCTCCATGCCCGGCTCATGAGTCAGGCGCTGCG
GAAGCTGACGGGCATCATCGCCAAGACCAATACCGTGGTCATCTTCATCAACCAGCTGCGGGAAAAGGTGGGCGTTATGT
ACGGCAACCCGGAGGTCACCACCGGCGGTCGGGCGCTGAAGTTCTACGCCTCCGTCCGCATCGATGTACGCCGCATCGAG
ACGCTGAAGTCCGGCGGCGAGATGATCGGCAACCGCACCCGTGCCAAGGTGGTCAAGAACAAGGTGGCGCCCCCCTTCCG
GGAAGCGGAGTTCGACATCATGTACGGCGAGGGCATCAGCAAGCTGGGCGAGATGCTGGATCTGGGCGTGAAGCTGGATC
TGGTACAGAAGAGCGGCTCCTGGTTCAACATGGGCGAGGTGCGCCTGGGGCAAGGCCGTGATGCCGCCAAGCAGTATCTG
CGGGATCATCCCGACGAGGCCGATGCACTGGAGGCCAACATCCGCCGGGACTTCCACAAGCTGATGAGCAATCAGTCCAA
GGTGGCGGCACGGGCCGCAGGCCGTGCGGTGGATGTATCCGCCGACGACTTCGACGATGCGGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

60.274

99.185

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

67.692

88.315

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.545

89.674

0.579
  recA Ralstonia pseudosolanacearum GMI1000

63.284

91.033

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

65.325

87.772

0.573
  recA Neisseria gonorrhoeae MS11

65.732

87.228

0.573
  recA Neisseria gonorrhoeae MS11

65.732

87.228

0.573
  recA Neisseria gonorrhoeae strain FA1090

65.732

87.228

0.573
  recA Pseudomonas stutzeri DSM 10701

59.773

95.924

0.573
  recA Helicobacter pylori strain NCTC11637

65.421

87.228

0.571
  recA Streptococcus pyogenes NZ131

57.221

99.728

0.571
  recA Helicobacter pylori 26695

65.109

87.228

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.665

87.5

0.557
  recA Streptococcus pneumoniae R6

60.177

92.12

0.554
  recA Streptococcus mitis NCTC 12261

60.177

92.12

0.554
  recA Streptococcus pneumoniae TIGR4

60.177

92.12

0.554
  recA Streptococcus pneumoniae Rx1

60.177

92.12

0.554
  recA Streptococcus pneumoniae D39

60.177

92.12

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.534

91.576

0.554
  recA Streptococcus mitis SK321

59.882

92.12

0.552
  recA Acinetobacter baylyi ADP1

61.329

89.946

0.552
  recA Acinetobacter baumannii D1279779

61.094

89.402

0.546
  recA Streptococcus mutans UA159

55.096

98.641

0.543
  recA Lactococcus lactis subsp. cremoris KW2

57.895

92.935

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.875

86.957

0.538
  recA Vibrio cholerae strain A1552

61.875

86.957

0.538

Multiple sequence alignment