Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EMQ_RS10165 Genome accession   NZ_AP023410
Coordinates   2227493..2228518 (+) Length   341 a.a.
NCBI ID   WP_026200093.1    Uniprot ID   -
Organism   Acetobacter aceti NBRC 14818     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2222493..2233518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EMQ_RS10140 (EMQ_2038) - 2222766..2223695 (-) 930 WP_010669135.1 nucleoside hydrolase -
  EMQ_RS10145 (EMQ_2039) - 2223908..2224450 (+) 543 WP_018308057.1 Dabb family protein -
  EMQ_RS10150 (EMQ_2040) tgt 2224580..2225743 (-) 1164 WP_018308056.1 tRNA guanosine(34) transglycosylase Tgt -
  EMQ_RS10155 - 2225740..2225946 (-) 207 WP_018308055.1 hypothetical protein -
  EMQ_RS10160 (EMQ_2041) queA 2225943..2227001 (-) 1059 WP_026200094.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EMQ_RS10165 (EMQ_2042) recA 2227493..2228518 (+) 1026 WP_026200093.1 recombinase RecA Machinery gene
  EMQ_RS10170 - 2228636..2229045 (-) 410 Protein_2012 IS5/IS1182 family transposase -
  EMQ_RS10175 (EMQ_2043) - 2229155..2229526 (-) 372 WP_232091785.1 helix-turn-helix domain-containing protein -
  EMQ_RS10180 (EMQ_2044) - 2229623..2230489 (+) 867 WP_010667580.1 SDR family oxidoreductase -
  EMQ_RS10185 (EMQ_2045) - 2230572..2230970 (+) 399 WP_010667579.1 nuclear transport factor 2 family protein -
  EMQ_RS10190 (EMQ_2046) - 2231597..2232016 (-) 420 WP_010668851.1 YeeE/YedE family protein -
  EMQ_RS10195 (EMQ_2047) - 2232020..2232436 (-) 417 WP_018308052.1 YeeE/YedE family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36754.99 Da        Isoelectric Point: 6.1169

>NTDB_id=83129 EMQ_RS10165 WP_026200093.1 2227493..2228518(+) (recA) [Acetobacter aceti NBRC 14818]
MDKTKALEGALSQIERAFGKGSIMRLGQRPKEEADAISTGSLGLDIALGIGGMPRGRIVEIYGPESSGKTTLALHIIAEA
QKKGGTCAFIDAEHALDPGYARKLGVDVDNLLISQPDAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSH
VGLHARLMSQALRKLTGTVSRSNTLLVFLNQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDEVVGNQTR
VKVVKNKMAPPFRQVEFDIMYGEGISKMGELIDLGVKAGVVEKSGAWFSYDSQRVGQGRENAKNFLREHPEMAHAIEHRI
REQAGVVAEAMMDGPDEGEEH

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=83129 EMQ_RS10165 WP_026200093.1 2227493..2228518(+) (recA) [Acetobacter aceti NBRC 14818]
ATGGACAAGACGAAGGCCCTTGAAGGGGCGCTGAGCCAGATTGAGCGTGCTTTCGGCAAAGGGTCGATCATGCGCCTCGG
ACAGCGTCCGAAAGAAGAAGCCGATGCGATCTCAACCGGGTCGCTCGGTCTTGATATCGCGCTTGGCATCGGCGGCATGC
CGCGCGGTCGTATTGTCGAGATTTATGGGCCGGAAAGCTCGGGCAAGACGACGCTGGCGCTGCACATCATTGCCGAAGCC
CAGAAAAAGGGCGGCACCTGCGCCTTTATTGACGCCGAGCACGCGCTTGATCCTGGCTACGCCCGCAAGCTGGGCGTTGA
TGTGGACAATCTGCTGATCAGTCAGCCGGATGCCGGTGAACAGGCGCTGGAAATCGCGGACACACTCGTCCGTTCCGGCG
CTGTTGACGTGCTGGTGGTGGACAGTGTCGCGGCCCTTGTTCCGCGCGCAGAACTGGAAGGCGATATGGGCGACAGCCAT
GTCGGTCTTCATGCCCGTCTGATGAGTCAGGCGCTGCGTAAGCTGACTGGCACGGTCTCACGTTCCAACACGCTGCTGGT
GTTCCTGAACCAGATCCGTCTGAAGATCGGCGTGATGTTCGGCAATCCGGAGACGACGACAGGCGGTAACGCCCTGAAGT
TCTACGCCTCCGTGCGTCTGGATATCCGTCGGATCGGGTCCATCAAGGACAAGGATGAGGTTGTCGGTAACCAGACCCGC
GTGAAAGTGGTCAAGAACAAGATGGCTCCTCCGTTCCGGCAGGTGGAATTCGACATCATGTATGGCGAAGGCATCAGCAA
GATGGGCGAGCTGATCGATCTTGGCGTGAAGGCCGGCGTGGTCGAAAAGTCGGGAGCGTGGTTCTCCTATGACAGCCAGC
GGGTTGGTCAGGGCCGTGAAAACGCCAAGAACTTCCTGCGCGAGCATCCGGAGATGGCTCATGCCATCGAGCATCGTATT
CGCGAGCAGGCCGGTGTGGTTGCCGAAGCCATGATGGACGGCCCGGACGAGGGCGAAGAGCACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

67.847

99.413

0.674
  recA Neisseria gonorrhoeae MS11

67.847

99.413

0.674
  recA Neisseria gonorrhoeae strain FA1090

67.847

99.413

0.674
  recA Ralstonia pseudosolanacearum GMI1000

70.336

95.894

0.674
  recA Glaesserella parasuis strain SC1401

71.473

93.548

0.669
  recA Acinetobacter baylyi ADP1

66.471

99.707

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.497

100

0.657
  recA Pseudomonas stutzeri DSM 10701

69.688

93.842

0.654
  recA Helicobacter pylori 26695

65.579

98.827

0.648
  recA Helicobacter pylori strain NCTC11637

65.579

98.827

0.648
  recA Vibrio cholerae strain A1552

68.224

94.135

0.642
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.224

94.135

0.642
  recA Acinetobacter baumannii D1279779

68.012

94.428

0.642
  recA Bacillus subtilis subsp. subtilis str. 168

66.154

95.308

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.805

96.188

0.604
  recA Latilactobacillus sakei subsp. sakei 23K

62.462

95.308

0.595
  recA Streptococcus mitis SK321

61.212

96.774

0.592
  recA Streptococcus mitis NCTC 12261

61.212

96.774

0.592
  recA Streptococcus pneumoniae Rx1

60.909

96.774

0.589
  recA Streptococcus pneumoniae D39

60.909

96.774

0.589
  recA Streptococcus pneumoniae R6

60.909

96.774

0.589
  recA Streptococcus pneumoniae TIGR4

60.909

96.774

0.589
  recA Streptococcus mutans UA159

59.94

97.361

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

93.842

0.581
  recA Streptococcus pyogenes NZ131

60.061

96.188

0.578
  recA Lactococcus lactis subsp. cremoris KW2

58.434

97.361

0.569

Multiple sequence alignment