Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QJS65_RS08560 Genome accession   NZ_CP124831
Coordinates   1689583..1690626 (+) Length   347 a.a.
NCBI ID   WP_007499478.1    Uniprot ID   A0A9X0KA92
Organism   Bacillus altitudinis strain Sample7_7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1684583..1695626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS65_RS08535 (QJS65_08535) - 1685368..1685625 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  QJS65_RS08540 (QJS65_08540) - 1685757..1686548 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  QJS65_RS08545 (QJS65_08545) - 1686572..1687483 (+) 912 WP_216895140.1 helix-turn-helix domain-containing protein -
  QJS65_RS08550 (QJS65_08550) pgsA 1687557..1688138 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QJS65_RS08555 (QJS65_08555) cinA 1688155..1689405 (+) 1251 WP_039166613.1 competence/damage-inducible protein A Machinery gene
  QJS65_RS08560 (QJS65_08560) recA 1689583..1690626 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  QJS65_RS08565 (QJS65_08565) rny 1690927..1692489 (+) 1563 WP_003211958.1 ribonuclease Y -
  QJS65_RS08570 (QJS65_08570) - 1692579..1693373 (+) 795 WP_282747191.1 TIGR00282 family metallophosphoesterase -
  QJS65_RS08575 (QJS65_08575) spoVS 1693576..1693836 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37820.95 Da        Isoelectric Point: 4.7701

>NTDB_id=828212 QJS65_RS08560 WP_007499478.1 1689583..1690626(+) (recA) [Bacillus altitudinis strain Sample7_7]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKSTDEEGQEELELND

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=828212 QJS65_RS08560 WP_007499478.1 1689583..1690626(+) (recA) [Bacillus altitudinis strain Sample7_7]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGTGGAT
ACCCTCGCGGCCGTATTATTGAAGTATATGGTCCAGAAAGTTCTGGTAAAACGACAGTAGCACTTCATGCGATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATCGATGCGGAGCATGCGCTAGATCCAGTTTACGCTCAAAAATTAGGTGT
CAACATTGATGAGTTGTTGCTTTCTCAGCCGGATACAGGAGAACAAGCACTTGAAATTGCAGAAGCACTTGTTCGTAGTG
GTGCAGTTGATATTGTTGTCATTGACTCAGTAGCTGCTCTTGTCCCAAAAGCAGAGATCGAAGGAGACATGGGAGATTCA
CACGTTGGTCTTCAAGCACGTTTGATGTCTCAAGCACTTCGTAAACTATCTGGTGCTATCAACAAATCAAAAACAATTGC
GATCTTTATTAACCAAATTCGTGAAAAAGTAGGGGTTATGTTTGGTAATCCTGAAACAACGCCTGGTGGACGTGCACTTA
AGTTCTATTCATCTGTTCGTTTAGAAGTACGCCGTGCTGAACAGTTGAAACAAGGGAACGACATCATGGGGAACAAAACG
AGAATTAAAGTTGTGAAAAACAAAGTGGCACCGCCATTCCGTATTGCCGAAGTAGACATTATGTACGGTGAAGGGATCTC
GAAAGAGGGAGAAATCATCGACCTTGGAAGCGAACTAGATATCGTCCAAAAGAGCGGGGCTTGGTATTCTTATCAAGAGG
AACGTCTTGGACAAGGACGTGAAAATGCGAAGCAATTCCTAAAAGAGAATAAAGACATTCTTCTTATGATTCAGGAGCAG
ATCAGGGAGCACTACGGTTTGGATACAAACGGAGTGAAATCAACTGACGAAGAAGGACAAGAAGAATTGGAATTGAATGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.687

95.677

0.925
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

93.66

0.703
  recA Streptococcus mutans UA159

65

100

0.674
  recA Streptococcus pneumoniae D39

67.052

99.712

0.669
  recA Streptococcus pneumoniae Rx1

67.052

99.712

0.669
  recA Streptococcus pneumoniae R6

67.052

99.712

0.669
  recA Streptococcus pneumoniae TIGR4

67.052

99.712

0.669
  recA Streptococcus mitis NCTC 12261

69.091

95.101

0.657
  recA Streptococcus mitis SK321

68.788

95.101

0.654
  recA Streptococcus pyogenes NZ131

67.988

94.524

0.643
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.101

0.631
  recA Neisseria gonorrhoeae strain FA1090

63.798

97.118

0.62
  recA Neisseria gonorrhoeae MS11

63.798

97.118

0.62
  recA Neisseria gonorrhoeae MS11

63.798

97.118

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

97.983

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.524

0.608
  recA Helicobacter pylori 26695

64.615

93.66

0.605
  recA Helicobacter pylori strain NCTC11637

64.615

93.66

0.605
  recA Glaesserella parasuis strain SC1401

61.471

97.983

0.602
  recA Acinetobacter baumannii D1279779

60.756

99.135

0.602
  recA Acinetobacter baylyi ADP1

60.35

98.847

0.597
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Pseudomonas stutzeri DSM 10701

61.261

95.965

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

93.084

0.559