Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PMI20_RS09495 | Genome accession | NZ_CP124732 |
| Coordinates | 2116161..2117213 (+) | Length | 350 a.a. |
| NCBI ID | WP_007923942.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. GM17 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2077363..2115494 | 2116161..2117213 | flank | 667 |
Gene organization within MGE regions
Location: 2077363..2117213
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PMI20_RS09265 (PMI20_009265) | - | 2077363..2078196 (+) | 834 | WP_007924027.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| PMI20_RS09270 (PMI20_009270) | rpoS | 2078303..2079307 (+) | 1005 | WP_007924026.1 | RNA polymerase sigma factor RpoS | - |
| PMI20_RS09275 (PMI20_009275) | fdxA | 2079808..2080131 (-) | 324 | WP_007924025.1 | ferredoxin FdxA | - |
| PMI20_RS09280 (PMI20_009280) | mutS | 2080274..2082853 (-) | 2580 | WP_007924024.1 | DNA mismatch repair protein MutS | - |
| PMI20_RS09285 (PMI20_009285) | - | 2083041..2083775 (+) | 735 | WP_164486162.1 | XRE family transcriptional regulator | - |
| PMI20_RS09290 (PMI20_009290) | - | 2084327..2084674 (+) | 348 | WP_007924020.1 | phage holin family protein | - |
| PMI20_RS09295 (PMI20_009295) | - | 2084859..2085623 (+) | 765 | WP_007924015.1 | N-acetylmuramoyl-L-alanine amidase | - |
| PMI20_RS09300 (PMI20_009300) | - | 2085858..2086382 (+) | 525 | WP_007924014.1 | hypothetical protein | - |
| PMI20_RS09305 (PMI20_009305) | - | 2086386..2086994 (+) | 609 | WP_007924013.1 | phage baseplate assembly protein V | - |
| PMI20_RS09310 (PMI20_009310) | - | 2087009..2087341 (+) | 333 | WP_007924012.1 | phage baseplate protein | - |
| PMI20_RS09315 (PMI20_009315) | - | 2087338..2088333 (+) | 996 | WP_007924011.1 | baseplate J/gp47 family protein | - |
| PMI20_RS09320 (PMI20_009320) | - | 2088330..2088965 (+) | 636 | WP_007924010.1 | phage tail protein I | - |
| PMI20_RS09325 (PMI20_009325) | - | 2088966..2090528 (+) | 1563 | WP_007924008.1 | phage tail protein | - |
| PMI20_RS09330 (PMI20_009330) | - | 2090539..2090964 (+) | 426 | WP_081502430.1 | phage tail protein | - |
| PMI20_RS09335 (PMI20_009335) | - | 2091065..2091286 (+) | 222 | WP_007924006.1 | hypothetical protein | - |
| PMI20_RS09340 (PMI20_009340) | - | 2091289..2092455 (+) | 1167 | WP_007924004.1 | tail protein | - |
| PMI20_RS09345 (PMI20_009345) | - | 2092455..2092961 (+) | 507 | WP_007924002.1 | phage major tail tube protein | - |
| PMI20_RS09350 (PMI20_009350) | - | 2093089..2093670 (+) | 582 | WP_007924000.1 | phage tail assembly protein | - |
| PMI20_RS09355 (PMI20_009355) | - | 2093799..2096069 (+) | 2271 | WP_007923989.1 | phage tail tape measure protein | - |
| PMI20_RS09360 (PMI20_009360) | - | 2096069..2096452 (+) | 384 | WP_007923988.1 | phage tail protein | - |
| PMI20_RS09365 (PMI20_009365) | - | 2096445..2096657 (+) | 213 | WP_007923987.1 | tail protein X | - |
| PMI20_RS09370 (PMI20_009370) | - | 2096668..2097687 (+) | 1020 | WP_007923985.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| PMI20_RS09375 (PMI20_009375) | - | 2097865..2098449 (+) | 585 | WP_007923983.1 | hypothetical protein | - |
| PMI20_RS09380 (PMI20_009380) | - | 2098446..2098628 (+) | 183 | WP_007923975.1 | DUF2635 domain-containing protein | - |
| PMI20_RS09385 (PMI20_009385) | - | 2098628..2100124 (+) | 1497 | WP_007923974.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| PMI20_RS09390 (PMI20_009390) | - | 2100191..2100538 (+) | 348 | WP_007923973.1 | phage tail tube protein | - |
| PMI20_RS09395 (PMI20_009395) | - | 2100535..2100831 (+) | 297 | WP_007923972.1 | phage tail assembly protein | - |
| PMI20_RS09400 (PMI20_009400) | - | 2100962..2102914 (+) | 1953 | WP_284172318.1 | phage tail protein | - |
| PMI20_RS09405 (PMI20_009405) | - | 2102901..2104139 (+) | 1239 | WP_007923969.1 | DNA circularization N-terminal domain-containing protein | - |
| PMI20_RS09410 (PMI20_009410) | - | 2104143..2105183 (+) | 1041 | WP_007923967.1 | phage baseplate assembly protein | - |
| PMI20_RS09415 (PMI20_009415) | - | 2105296..2105805 (+) | 510 | WP_007923965.1 | phage baseplate assembly protein | - |
| PMI20_RS09420 (PMI20_009420) | - | 2105805..2106203 (+) | 399 | WP_007923962.1 | phage GP46 family protein | - |
| PMI20_RS09425 (PMI20_009425) | - | 2106193..2107233 (+) | 1041 | WP_007923960.1 | baseplate J/gp47 family protein | - |
| PMI20_RS09430 (PMI20_009430) | - | 2107221..2107820 (+) | 600 | WP_007923959.1 | putative phage tail protein | - |
| PMI20_RS09435 (PMI20_009435) | - | 2107832..2108689 (+) | 858 | WP_007923958.1 | hypothetical protein | - |
| PMI20_RS09440 (PMI20_009440) | - | 2108694..2109335 (+) | 642 | WP_007923957.1 | hypothetical protein | - |
| PMI20_RS09445 (PMI20_009445) | - | 2109445..2110365 (+) | 921 | WP_007923956.1 | glycine-rich domain-containing protein | - |
| PMI20_RS09450 (PMI20_009450) | - | 2110365..2110847 (+) | 483 | WP_007923955.1 | phage tail assembly chaperone | - |
| PMI20_RS09455 (PMI20_009455) | - | 2111014..2111934 (+) | 921 | WP_007923954.1 | hypothetical protein | - |
| PMI20_RS09460 (PMI20_009460) | - | 2111937..2112422 (+) | 486 | WP_157173144.1 | phage tail assembly chaperone | - |
| PMI20_RS09465 (PMI20_009465) | - | 2112493..2113704 (+) | 1212 | WP_007923953.1 | hypothetical protein | - |
| PMI20_RS09470 (PMI20_009470) | - | 2113876..2114064 (+) | 189 | Protein_1867 | phage tail assembly chaperone | - |
| PMI20_RS09475 (PMI20_009475) | - | 2114077..2114367 (+) | 291 | WP_274517823.1 | phage tail assembly chaperone | - |
| PMI20_RS09480 (PMI20_009480) | - | 2114413..2114976 (+) | 564 | WP_007923947.1 | glycoside hydrolase family 19 protein | - |
| PMI20_RS09485 (PMI20_009485) | - | 2114958..2115494 (+) | 537 | WP_007923944.1 | lysis system i-spanin subunit Rz | - |
| PMI20_RS09490 (PMI20_009490) | - | 2115577..2116077 (+) | 501 | WP_007923943.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| PMI20_RS09495 (PMI20_009495) | recA | 2116161..2117213 (+) | 1053 | WP_007923942.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37450.02 Da Isoelectric Point: 5.4974
>NTDB_id=827784 PMI20_RS09495 WP_007923942.1 2116161..2117213(+) (recA) [Pseudomonas sp. GM17]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIRDKLLAPTADVKASPVNETIDDMADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIRDKLLAPTADVKASPVNETIDDMADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=827784 PMI20_RS09495 WP_007923942.1 2116161..2117213(+) (recA) [Pseudomonas sp. GM17]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGCCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATCGGCG
GCCTGCCAAAGGGCCGTATTGTTGAAATCTACGGTCCGGAATCGTCCGGTAAAACCACCCTGACCCTGTCCGTGATTGCC
CAGGCACAGAAGATGGGCGCCACTTGCGCCTTCGTCGACGCCGAGCACGCACTGGACCCGGAATATGCCGGCAAGCTGGG
GGTCAACGTTGACGACCTGCTGGTTTCTCAGCCGGATACCGGTGAACAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCCATCGACGTGATCGTGATCGACTCCGTGGCGGCACTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTGGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCAC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGTCGTACTGGTGCGGTGAAGGAAGGTGACGAAGTCGTCGGTAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCACCGTTCCGCCAGGCTGAATTCCAGATCCTGTACGGCAAGGGTAT
CTACCTGAACGGCGAGATCATCGATCTGGGCGTGCTGCACGGTTTCCTCGAGAAGTCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATTGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGTAACGCCCTCGAGAAG
CAGATTCGCGACAAGCTGCTGGCTCCGACCGCAGATGTCAAAGCTTCGCCGGTCAACGAGACCATCGATGACATGGCCGA
CGCGGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGCCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATCGGCG
GCCTGCCAAAGGGCCGTATTGTTGAAATCTACGGTCCGGAATCGTCCGGTAAAACCACCCTGACCCTGTCCGTGATTGCC
CAGGCACAGAAGATGGGCGCCACTTGCGCCTTCGTCGACGCCGAGCACGCACTGGACCCGGAATATGCCGGCAAGCTGGG
GGTCAACGTTGACGACCTGCTGGTTTCTCAGCCGGATACCGGTGAACAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCCATCGACGTGATCGTGATCGACTCCGTGGCGGCACTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTGGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCAC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGTCGTACTGGTGCGGTGAAGGAAGGTGACGAAGTCGTCGGTAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCACCGTTCCGCCAGGCTGAATTCCAGATCCTGTACGGCAAGGGTAT
CTACCTGAACGGCGAGATCATCGATCTGGGCGTGCTGCACGGTTTCCTCGAGAAGTCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATTGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGTAACGCCCTCGAGAAG
CAGATTCGCGACAAGCTGCTGGCTCCGACCGCAGATGTCAAAGCTTCGCCGGTCAACGAGACCATCGATGACATGGCCGA
CGCGGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.