Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QA539_RS04855 Genome accession   NZ_CP124591
Coordinates   967422..968483 (+) Length   353 a.a.
NCBI ID   WP_219494694.1    Uniprot ID   -
Organism   Macrococcus sp. CCM 8659     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 962422..973483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA539_RS04830 (QA539_04815) - 962939..964207 (+) 1269 WP_219494689.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  QA539_RS04835 (QA539_04820) - 964200..964907 (+) 708 WP_419895566.1 SDR family oxidoreductase -
  QA539_RS04840 (QA539_04825) - 964918..965709 (+) 792 WP_219494691.1 YmfK family protein -
  QA539_RS04845 (QA539_04830) - 965725..966546 (+) 822 WP_219494692.1 helix-turn-helix domain-containing protein -
  QA539_RS04850 (QA539_04835) pgsA 966563..967144 (+) 582 WP_419895567.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QA539_RS04855 (QA539_04840) recA 967422..968483 (+) 1062 WP_219494694.1 recombinase RecA Machinery gene
  QA539_RS04860 (QA539_04845) rny 968810..970369 (+) 1560 WP_219494695.1 ribonuclease Y -
  QA539_RS04865 (QA539_04850) - 970445..970627 (-) 183 WP_041635906.1 hypothetical protein -
  QA539_RS04870 (QA539_04855) - 970723..971517 (+) 795 WP_099483140.1 TIGR00282 family metallophosphoesterase -
  QA539_RS04875 (QA539_04860) - 971622..973355 (+) 1734 WP_419895568.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38429.60 Da        Isoelectric Point: 5.1195

>NTDB_id=826523 QA539_RS04855 WP_219494694.1 967422..968483(+) (recA) [Macrococcus sp. CCM 8659]
MSERQKALDTVIKNMEKSFGKGAVMKLGDRTDRNVSTVSSGSITLDSALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQRQGGVAAFIDAEHALDPVYAKNLGVDIENLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGSISKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT
KIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGAEYEVLQKSGAWYSYDGERIGQGRENIKTYLKENPEVRDEIDQK
IRKAMGVGASLEEASAQKEEVPVEDKLFDDELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=826523 QA539_RS04855 WP_219494694.1 967422..968483(+) (recA) [Macrococcus sp. CCM 8659]
ATGAGTGAAAGACAAAAAGCATTAGACACAGTTATTAAAAATATGGAAAAATCATTTGGGAAAGGTGCAGTAATGAAGTT
AGGAGACCGTACTGACCGTAATGTCTCTACAGTATCAAGCGGCTCTATTACATTAGATAGTGCACTTGGTGTCGGTGGTT
ACCCGAAAGGTCGTATTATAGAAATTTATGGTCCTGAAAGTTCAGGTAAGACAACGGTGGCACTACATGCTATCGCAGAG
GTACAGCGCCAAGGTGGAGTTGCCGCATTTATTGATGCTGAGCATGCACTTGATCCGGTATATGCTAAGAATCTTGGAGT
AGATATCGAAAATCTTTACTTATCTCAACCCGATCATGGTGAACAAGGACTGGAAATTGCAGAAGCATTTGTCAGAAGTG
GTGCGGTAGATATTATTGTGGTCGATTCAGTTGCAGCCTTAACACCTAAAGCGGAAATTGAAGGAGAGATGGGAGACTCG
CATATGGGACTTCAAGCGCGTCTTATGTCTCAAGCGTTACGTAAGTTATCAGGTTCTATATCTAAGTCTAATACGATTGC
AATATTCATCAACCAAGTACGTGAGAAGATTGGTGTAATGTTCGGTAATCCAGAAACGACTCCAGGTGGTCGTGCGCTTA
AATTCTATTCTTCAGTGCGTCTCGAAGTACGACGTGCAGAACAATTGAAACAAGGTCAGGAAATTGTAGGGAATAGAACA
AAGATTAAGGTCGTTAAAAACAAAGTTGCACCTCCTTTTAAAGTAGCAGAAGTTGATATTATGTACGGTAAAGGTATTTC
TCGTGAAGGAGAAATCGTTGATTTAGGTGCAGAATATGAAGTGCTGCAAAAGTCAGGGGCATGGTACTCTTATGATGGAG
AACGTATTGGTCAAGGGCGAGAAAATATTAAGACTTATCTGAAAGAAAACCCAGAAGTACGTGACGAAATCGATCAGAAG
ATTCGTAAGGCGATGGGTGTCGGTGCTTCGTTAGAAGAGGCGTCAGCACAGAAAGAAGAAGTGCCAGTAGAAGATAAGTT
ATTCGACGATGAGTTAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.758

92.635

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

68.555

100

0.686
  recA Streptococcus mitis SK321

62.81

100

0.646
  recA Streptococcus pyogenes NZ131

68.598

92.918

0.637
  recA Streptococcus mutans UA159

67.781

93.201

0.632
  recA Streptococcus mitis NCTC 12261

64.723

97.167

0.629
  recA Streptococcus pneumoniae TIGR4

66.061

93.484

0.618
  recA Streptococcus pneumoniae Rx1

66.061

93.484

0.618
  recA Streptococcus pneumoniae D39

66.061

93.484

0.618
  recA Streptococcus pneumoniae R6

66.061

93.484

0.618
  recA Lactococcus lactis subsp. cremoris KW2

65.152

93.484

0.609
  recA Acinetobacter baylyi ADP1

63.798

95.467

0.609
  recA Acinetobacter baumannii D1279779

63.127

96.034

0.606
  recA Neisseria gonorrhoeae MS11

63.174

94.618

0.598
  recA Neisseria gonorrhoeae strain FA1090

63.174

94.618

0.598
  recA Neisseria gonorrhoeae MS11

63.174

94.618

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

92.068

0.592
  recA Pseudomonas stutzeri DSM 10701

59.599

98.867

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.596

91.218

0.589
  recA Vibrio cholerae strain A1552

64.596

91.218

0.589
  recA Ralstonia pseudosolanacearum GMI1000

66.134

88.669

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

93.201

0.584
  recA Helicobacter pylori strain NCTC11637

62.769

92.068

0.578
  recA Helicobacter pylori 26695

62.769

92.068

0.578
  recA Glaesserella parasuis strain SC1401

62.229

91.501

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.856

92.635

0.564