Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QJS82_RS01440 Genome accession   NZ_CP124526
Coordinates   326570..327628 (-) Length   352 a.a.
NCBI ID   WP_201628223.1    Uniprot ID   -
Organism   Psychrobacter sp. WB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 321570..332628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS82_RS01415 (QJS82_01415) - 321688..321987 (+) 300 WP_281490976.1 succinate dehydrogenase assembly factor 2 -
  QJS82_RS01420 (QJS82_01420) - 322028..322477 (+) 450 WP_281490977.1 hypothetical protein -
  QJS82_RS01425 (QJS82_01425) - 322763..323491 (+) 729 WP_281490978.1 YidB family protein -
  QJS82_RS01430 (QJS82_01430) - 323934..325391 (+) 1458 WP_281490979.1 anion permease -
  QJS82_RS01435 (QJS82_01435) - 325411..326529 (-) 1119 WP_281490980.1 regulatory protein RecX -
  QJS82_RS01440 (QJS82_01440) recA 326570..327628 (-) 1059 WP_201628223.1 recombinase RecA Machinery gene
  QJS82_RS01445 (QJS82_01445) trmB 328717..329589 (-) 873 WP_281490981.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QJS82_RS01450 (QJS82_01450) - 329857..330792 (+) 936 WP_281490982.1 DUF2628 domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37781.17 Da        Isoelectric Point: 4.9566

>NTDB_id=826213 QJS82_RS01440 WP_201628223.1 326570..327628(-) (recA) [Psychrobacter sp. WB2]
MDENKAKALKAALGQIEKQFGKNTIMHLGDDSAILDVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAI
AECQKQGGVCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLVRSGAVDMIVIDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENPAIAQEIE
AKIRDEKLGTKKQAKATDTDEANEELASEPVQ

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=826213 QJS82_RS01440 WP_201628223.1 326570..327628(-) (recA) [Psychrobacter sp. WB2]
ATGGACGAAAATAAAGCCAAAGCCCTCAAAGCAGCCCTTGGTCAAATCGAAAAGCAGTTCGGTAAAAACACCATCATGCA
TTTAGGTGATGACTCTGCCATTCTTGATGTGGATGTGGTCTCAACGGGCTCGTTGGGGCTGGATATTGCGCTTGGTATTG
GCGGCCTACCAAAAGGTCGTATCGTTGAGATTTACGGCCCAGAAAGCTCGGGTAAAACAACCATGACGCTGCAAGCAATT
GCGGAATGCCAAAAGCAAGGCGGTGTCTGCGCCTTTATCGATGCTGAGCATGCGCTAGATCCAGTTTATGCGCGCAAGCT
TGGCGTGAACACTGATGACCTACTGCTCTCTCAGCCTGACAATGGTGAGCAAGCACTTGAAATCACCGACATGCTAGTGC
GTTCTGGGGCGGTTGATATGATTGTCATTGACTCGGTCGCTGCATTGACGCCGCGCGCGGAGATTGAAGGCGAGATGGGC
GACTCACACATGGGTCTGCAAGCACGTCTAATGAGCCAAGCGCTACGTAAAATTACTGGTAATGCCAAACGCTCAAATTG
TATGGTGGTGTTTATTAACCAAATCCGTATGAAAATTGGTGTGATGTTCGGTAGCCCTGAGACCACGACTGGTGGTAACG
CGCTTAAGTTTTATGCCTCGGTACGTATGGATATCCGCCGTATCGGTGCGGTTAAAAATGGTGATGAAATCATCGGTAAC
CAAACCCGTGTTAAAGTCATCAAAAATAAAATGGCACCGCCTTTCCGCCAAGCCGAGTTTGAGATTACTTATGGTGAAGG
TACCAACCATTTAGCCGAAGTGATTGACTTGGGTGTTGAGATTGGCGCAGTTGGCAAAGCTGGCTCTTGGTATAGCTATG
GCGATGAAAAAATCGGTCAAGGTAAAGCCAATTCTGTGTTGTTCTTAAAAGAAAATCCCGCGATTGCACAAGAAATCGAA
GCTAAAATTCGTGATGAAAAGCTTGGGACAAAAAAACAAGCTAAAGCCACAGATACTGACGAAGCCAATGAAGAACTTGC
TTCTGAACCTGTACAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

75.714

99.432

0.753
  recA Acinetobacter baumannii D1279779

74.785

99.148

0.741
  recA Pseudomonas stutzeri DSM 10701

72.434

96.875

0.702
  recA Glaesserella parasuis strain SC1401

69.388

97.443

0.676
  recA Vibrio cholerae strain A1552

68.497

98.295

0.673
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.497

98.295

0.673
  recA Ralstonia pseudosolanacearum GMI1000

69.394

93.75

0.651
  recA Neisseria gonorrhoeae strain FA1090

70.062

92.045

0.645
  recA Neisseria gonorrhoeae MS11

70.062

92.045

0.645
  recA Neisseria gonorrhoeae MS11

70.062

92.045

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.768

98.011

0.625
  recA Helicobacter pylori strain NCTC11637

61.383

98.58

0.605
  recA Helicobacter pylori 26695

61.095

98.58

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.09

95.17

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

63.354

91.477

0.58
  recA Streptococcus mitis NCTC 12261

56.091

100

0.563
  recA Streptococcus mutans UA159

56.41

99.716

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.87

91.477

0.557
  recA Streptococcus mitis SK321

55.524

100

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

60.681

91.761

0.557
  recA Streptococcus pneumoniae Rx1

58.951

92.045

0.543
  recA Streptococcus pneumoniae D39

58.951

92.045

0.543
  recA Streptococcus pneumoniae R6

58.951

92.045

0.543
  recA Streptococcus pneumoniae TIGR4

58.951

92.045

0.543
  recA Lactococcus lactis subsp. cremoris KW2

58.385

91.477

0.534
  recA Streptococcus pyogenes NZ131

57.362

92.614

0.531