Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QCL65_RS20110 Genome accession   NZ_CP124218
Coordinates   4351750..4352820 (-) Length   356 a.a.
NCBI ID   WP_407311858.1    Uniprot ID   -
Organism   Pseudomonas sp. nanlin1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4346750..4357820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCL65_RS20080 (QCL65_19920) - 4347569..4347985 (+) 417 WP_407311850.1 quorum-sensing-regulated virulence factor family protein -
  QCL65_RS20085 (QCL65_19925) - 4347986..4348183 (-) 198 WP_407311852.1 hypothetical protein -
  QCL65_RS20090 - 4348363..4349226 (-) 864 WP_407316953.1 methyl-accepting chemotaxis protein -
  QCL65_RS20095 - 4349218..4349988 (-) 771 Protein_3954 MCP four helix bundle domain-containing protein -
  QCL65_RS20100 (QCL65_19935) - 4350182..4351252 (+) 1071 WP_407311854.1 LOG family protein -
  QCL65_RS20105 (QCL65_19940) recX 4351270..4351740 (-) 471 WP_407311856.1 recombination regulator RecX -
  QCL65_RS20110 (QCL65_19945) recA 4351750..4352820 (-) 1071 WP_407311858.1 recombinase RecA Machinery gene
  QCL65_RS20115 (QCL65_19950) - 4352906..4353406 (-) 501 WP_407311860.1 CinA family protein -
  QCL65_RS20120 (QCL65_19955) - 4353479..4353805 (-) 327 WP_407311862.1 MFS transporter -
  QCL65_RS20125 (QCL65_19960) - 4353925..4354254 (+) 330 WP_407311864.1 hypothetical protein -
  QCL65_RS20130 (QCL65_19965) - 4354496..4355215 (-) 720 WP_407316955.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37844.41 Da        Isoelectric Point: 5.8152

>NTDB_id=823948 QCL65_RS20110 WP_407311858.1 4351750..4352820(-) (recA) [Pseudomonas sp. nanlin1]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLGVTHGLLEKSGAWYSYQGSKIGQGKANSAKFLQDNPEIKAVLEK
QIRDKLLTGGVEAKDALDAKGKAALTAEDDLVDADA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=823948 QCL65_RS20110 WP_407311858.1 4351750..4352820(-) (recA) [Pseudomonas sp. nanlin1]
ATGGACGACAACAAGAAGCGTGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTGATGCG
CATGGGTGACCATGAGCGTCAGGCGATCCCGGCCATCTCCACCGGTTCGCTGGGCCTGGACATCGCGCTGGGCATTGGTG
GCCTGCCTAAAGGCCGTATCGTCGAAATCTACGGCCCTGAGTCTTCGGGTAAGACCACGCTGACCCTGTCGGTGATCGCC
CAGGCTCAGAAAGCCGGCGCTACCTGTGCGTTCGTCGATGCCGAACACGCCTTGGACCCGGAATATGCCGGTAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTGTCGCAGCCTGATACCGGTGAGCAGGCCCTGGAAATTACCGACATGCTGGTACGCT
CCAACGCCGTCGACGTCATTATCGTCGACTCCGTGGCGGCACTGGTGCCCAAAGCTGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCTCGCTTGATGTCTCAGGCACTGCGCAAAATCACCGGTAACATCAAAAACGCCAACTGCCT
GGTGATCTTCATTAACCAGATCCGTATGAAGATCGGCGTTATGTTCGGTAGCCCGGAGACCACCACTGGTGGTAACGCCC
TCAAGTTCTACGCGTCGGTTCGCCTCGACATTCGCCGCACCGGTGCAGTGAAAGAAGGTGATGAGGTGGTGGGCAGCGAG
ACCCGTGTCAAAGTAGTCAAGAACAAAGTTGCACCGCCATTCCGCCAGGCAGAGTTCCAGATTCTTTATGGCAAAGGTAT
TTACCTTAATGGCGAGATCGTCGACCTGGGTGTGACCCACGGTCTGCTTGAGAAGTCCGGGGCCTGGTACAGCTACCAAG
GCAGCAAAATCGGCCAAGGTAAAGCCAACTCGGCCAAGTTCCTGCAGGACAACCCAGAAATCAAAGCGGTCCTTGAGAAG
CAAATCCGCGACAAGTTGCTCACTGGCGGTGTTGAAGCCAAGGATGCACTGGATGCCAAGGGTAAGGCTGCTTTGACGGC
CGAAGATGATCTGGTCGATGCTGACGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.324

99.719

0.871
  recA Acinetobacter baylyi ADP1

74.852

94.944

0.711
  recA Acinetobacter baumannii D1279779

74.622

92.978

0.694
  recA Vibrio cholerae strain A1552

73.78

92.135

0.68
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.78

92.135

0.68
  recA Glaesserella parasuis strain SC1401

73.457

91.011

0.669
  recA Ralstonia pseudosolanacearum GMI1000

70.149

94.101

0.66
  recA Neisseria gonorrhoeae MS11

71.296

91.011

0.649
  recA Neisseria gonorrhoeae MS11

71.296

91.011

0.649
  recA Neisseria gonorrhoeae strain FA1090

71.296

91.011

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

91.854

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.275

93.82

0.584
  recA Helicobacter pylori strain NCTC11637

61.162

91.854

0.562
  recA Helicobacter pylori 26695

60.55

91.854

0.556
  recA Bacillus subtilis subsp. subtilis str. 168

61.371

90.169

0.553
  recA Streptococcus mutans UA159

60

91.292

0.548
  recA Streptococcus mitis SK321

57.567

94.663

0.545
  recA Streptococcus pneumoniae Rx1

58.589

91.573

0.537
  recA Streptococcus pneumoniae D39

58.589

91.573

0.537
  recA Streptococcus pneumoniae R6

58.589

91.573

0.537
  recA Streptococcus pneumoniae TIGR4

58.589

91.573

0.537
  recA Streptococcus mitis NCTC 12261

58.824

90.73

0.534
  recA Streptococcus pyogenes NZ131

57.927

92.135

0.534
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

90.169

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.79

91.011

0.517
  recA Lactococcus lactis subsp. cremoris KW2

56.037

90.73

0.508