Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C12CBH8_RS00730 Genome accession   NZ_AP023321
Coordinates   166544..167719 (+) Length   391 a.a.
NCBI ID   WP_215533358.1    Uniprot ID   A0A7I8CYJ9
Organism   Solibaculum mannosilyticum strain 12CBH8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 161544..172719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C12CBH8_RS00710 (C12CBH8_01430) fusA 162033..164135 (+) 2103 WP_090263994.1 elongation factor G -
  C12CBH8_RS00720 (C12CBH8_01440) - 164583..165593 (+) 1011 WP_246441603.1 DUF1385 domain-containing protein -
  C12CBH8_RS00725 (C12CBH8_01450) prmC 165590..166459 (+) 870 WP_090263997.1 peptide chain release factor N(5)-glutamine methyltransferase -
  C12CBH8_RS00730 (C12CBH8_01460) recA 166544..167719 (+) 1176 WP_215533358.1 recombinase RecA Machinery gene
  C12CBH8_RS00735 (C12CBH8_01470) - 167716..168345 (+) 630 WP_215533359.1 regulatory protein RecX -
  C12CBH8_RS00740 (C12CBH8_01480) rimO 168383..169723 (+) 1341 WP_090264002.1 30S ribosomal protein S12 methylthiotransferase RimO -
  C12CBH8_RS00745 (C12CBH8_01490) pgsA 169959..170528 (+) 570 WP_099323053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C12CBH8_RS00750 (C12CBH8_01500) epsC 170917..171558 (+) 642 WP_090264006.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 41453.53 Da        Isoelectric Point: 6.7519

>NTDB_id=82376 C12CBH8_RS00730 WP_215533358.1 166544..167719(+) (recA) [Solibaculum mannosilyticum strain 12CBH8]
MASSMDKKGSVTPANDKKKALETALTNIEKQFGKGAVMKLGQNQGMNVEAISTGSLSLDMALGIGGVPRGRIIEIYGPES
SGKTTLALHVIAEAQKKGGEAAFIDVEHALDPVYAAALGVDVDSLLVSQPDTGEQALEITEALVRSGALDVVVVDSVAAL
VPRAEIEGEMGDTHVGLQARLMSQALRKLAGVIAKSNCVAIFINQLREKVGVSYGNPEVTPGGRALKFYASVRIDVRRIE
TLKNGTEMVGSRTRAKVVKNKVAPPFKVAEFDVMYGKGISREGELLDMAVLANVVQKSGSWFSYGDVRLGQGRDAAKNYF
ADNPEVAAEVEAKVREKMKEQEEAKVKPRRPVSAPAPAVPSAQAAPAAKAPEAPKPARKAVDIDILVDDDE

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=82376 C12CBH8_RS00730 WP_215533358.1 166544..167719(+) (recA) [Solibaculum mannosilyticum strain 12CBH8]
ATGGCATCTTCCATGGATAAAAAGGGGTCGGTTACCCCTGCGAACGACAAAAAAAAGGCGCTGGAAACGGCCCTTACGAA
TATTGAAAAACAGTTTGGCAAAGGCGCCGTCATGAAGCTGGGGCAGAACCAGGGTATGAACGTGGAGGCCATCTCCACCG
GTTCGCTTTCGCTGGATATGGCACTGGGCATCGGAGGCGTCCCGAGGGGACGTATCATCGAGATCTACGGCCCGGAATCG
TCGGGTAAGACCACTTTGGCGCTGCACGTCATTGCCGAGGCCCAGAAAAAGGGAGGCGAGGCCGCGTTCATCGATGTGGA
GCACGCTTTGGATCCTGTGTATGCCGCGGCGCTTGGAGTGGATGTGGATTCTCTGCTTGTCTCCCAGCCGGATACCGGCG
AGCAGGCGTTGGAGATCACCGAAGCCCTGGTGCGTTCCGGGGCTTTGGACGTGGTGGTTGTGGACTCAGTGGCGGCTTTA
GTGCCCCGGGCCGAGATTGAGGGCGAAATGGGCGATACCCATGTGGGCCTTCAGGCCAGGCTGATGTCTCAGGCGTTGCG
CAAATTGGCCGGCGTTATCGCAAAATCCAATTGTGTGGCTATTTTTATCAACCAGCTGCGTGAGAAGGTGGGCGTCAGCT
ACGGCAATCCGGAAGTCACGCCCGGCGGCCGCGCCCTCAAGTTCTATGCAAGCGTGCGCATCGATGTGCGCCGTATTGAG
ACATTGAAAAACGGCACCGAAATGGTGGGTTCCCGTACTCGCGCTAAAGTAGTGAAGAATAAGGTGGCGCCGCCCTTTAA
GGTGGCGGAATTTGACGTCATGTACGGAAAGGGCATTTCCCGGGAGGGAGAGCTTCTGGATATGGCGGTGCTTGCAAACG
TGGTGCAGAAGAGCGGATCCTGGTTCTCTTACGGGGATGTTCGTCTAGGCCAGGGCAGGGACGCCGCCAAGAATTATTTT
GCAGACAATCCCGAAGTGGCCGCCGAAGTGGAGGCAAAAGTCCGGGAAAAGATGAAGGAACAGGAGGAGGCCAAAGTAAA
GCCTCGCCGTCCTGTTTCAGCTCCGGCGCCTGCCGTACCTTCTGCACAGGCGGCCCCAGCCGCCAAGGCGCCGGAAGCTC
CGAAACCGGCCCGCAAAGCGGTGGATATCGACATTTTGGTGGATGACGACGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8CYJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

68.847

82.097

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

82.353

0.55
  recA Streptococcus pyogenes NZ131

61.919

87.98

0.545
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.17

87.212

0.542
  recA Helicobacter pylori strain NCTC11637

62.13

86.445

0.537
  recA Pseudomonas stutzeri DSM 10701

64.706

82.609

0.535
  recA Helicobacter pylori 26695

61.834

86.445

0.535
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.84

84.655

0.532
  recA Vibrio cholerae strain A1552

62.84

84.655

0.532
  recA Streptococcus mutans UA159

60.997

87.212

0.532
  recA Acinetobacter baumannii D1279779

64.396

82.609

0.532
  recA Streptococcus mitis SK321

63.889

82.864

0.529
  recA Acinetobacter baylyi ADP1

63.58

82.864

0.527
  recA Streptococcus mitis NCTC 12261

63.272

82.864

0.524
  recA Glaesserella parasuis strain SC1401

63.354

82.353

0.522
  recA Streptococcus pneumoniae R6

62.385

83.632

0.522
  recA Streptococcus pneumoniae TIGR4

62.385

83.632

0.522
  recA Streptococcus pneumoniae Rx1

62.385

83.632

0.522
  recA Streptococcus pneumoniae D39

62.385

83.632

0.522
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.462

83.12

0.519
  recA Neisseria gonorrhoeae strain FA1090

62.848

82.609

0.519
  recA Neisseria gonorrhoeae MS11

62.848

82.609

0.519
  recA Neisseria gonorrhoeae MS11

62.848

82.609

0.519
  recA Ralstonia pseudosolanacearum GMI1000

65.273

79.54

0.519
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.346

82.864

0.517
  recA Lactococcus lactis subsp. cremoris KW2

61.728

82.864

0.512

Multiple sequence alignment