Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QHG62_RS00340 Genome accession   NZ_CP123990
Coordinates   83474..84592 (-) Length   372 a.a.
NCBI ID   WP_281148836.1    Uniprot ID   -
Organism   Variovorax paradoxus strain MGMM5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 78474..89592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG62_RS00315 (QHG62_00315) sucC 79369..80535 (-) 1167 WP_281148831.1 ADP-forming succinate--CoA ligase subunit beta -
  QHG62_RS00320 (QHG62_00320) argC 80742..81665 (+) 924 WP_281148832.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  QHG62_RS00325 (QHG62_00325) - 81691..82422 (-) 732 WP_281148833.1 hypothetical protein -
  QHG62_RS00330 (QHG62_00330) - 82548..82985 (-) 438 WP_281148834.1 SRPBCC family protein -
  QHG62_RS00335 (QHG62_00335) recX 82960..83427 (-) 468 WP_281148835.1 recombination regulator RecX -
  QHG62_RS00340 (QHG62_00340) recA 83474..84592 (-) 1119 WP_281148836.1 recombinase RecA Machinery gene
  QHG62_RS00345 (QHG62_00345) - 84739..85224 (+) 486 WP_281148837.1 helix-turn-helix domain-containing protein -
  QHG62_RS00350 (QHG62_00350) - 85290..85964 (+) 675 WP_126749612.1 response regulator transcription factor -
  QHG62_RS00355 (QHG62_00355) - 86005..87450 (+) 1446 WP_281148838.1 sensor histidine kinase -
  QHG62_RS00360 (QHG62_00360) - 87463..87672 (-) 210 WP_126749614.1 sporulation protein -
  QHG62_RS00365 (QHG62_00365) - 87681..88505 (-) 825 WP_281148839.1 biotin--[acetyl-CoA-carboxylase] ligase -
  QHG62_RS00370 (QHG62_00370) - 88508..89137 (-) 630 WP_281148840.1 SET domain-containing protein-lysine N-methyltransferase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39582.46 Da        Isoelectric Point: 5.2297

>NTDB_id=823612 QHG62_RS00340 WP_281148836.1 83474..84592(-) (recA) [Variovorax paradoxus strain MGMM5]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADADAPATEKAEKPAKAAKAEKADKGE

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=823612 QHG62_RS00340 WP_281148836.1 83474..84592(-) (recA) [Variovorax paradoxus strain MGMM5]
ATGGACGCAGTCGTCAAGGGCGCAAGCATCTCGGTCGCCAACAGTGAAAAGGCCAAGGCCCTGCAAGCCGCGCTGGCGCA
AATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTCGGCGAAGGCGAGGCGCTCGAGGACATCCAGGTGGTTTCCA
CCGGCTCGCTCGGCCTTGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTACGGTCCTGAA
TCGTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGCCATGCAAAAGCAGGCCGGCACCTGCGCCTTCGTCGATGC
CGAGCATGCGCTCGACGTGCAATACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGTTGATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAAATCGTCGATTCGCTGGTGCGCTCGGGTGCCGTGGACCTGATCGTTGTCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTCATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATT
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTGAAGGTGGTGAAGAACAAGGTCTCGCCCCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAAGGCGAAATCATCGACATGGGCGTGAACGCCA
AGATCCTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAAATCGGCCAGGGCCGCGACAACGCACGCGAGTTC
CTGCGCGAGAACCCCGAGTTGTCGCGCGAAATCGAAAACAAGGTGCGCGAGTCGCTGGGTATCCCGCTGCTCGCAGCCGA
TGCAGACGCCCCCGCGACCGAAAAGGCCGAGAAGCCTGCAAAGGCGGCCAAGGCCGAGAAGGCTGACAAGGGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.232

91.667

0.745
  recA Pseudomonas stutzeri DSM 10701

69.914

93.817

0.656
  recA Acinetobacter baylyi ADP1

69.364

93.011

0.645
  recA Neisseria gonorrhoeae MS11

68.786

93.011

0.64
  recA Neisseria gonorrhoeae strain FA1090

68.786

93.011

0.64
  recA Neisseria gonorrhoeae MS11

68.786

93.011

0.64
  recA Acinetobacter baumannii D1279779

68.497

93.011

0.637
  recA Glaesserella parasuis strain SC1401

71.605

87.097

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.909

88.441

0.618
  recA Vibrio cholerae strain A1552

69.909

88.441

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.781

88.441

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.465

88.978

0.591
  recA Helicobacter pylori 26695

65.244

88.172

0.575
  recA Helicobacter pylori strain NCTC11637

65.244

88.172

0.575
  recA Streptococcus mutans UA159

59.331

96.505

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

87.903

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

61.224

92.204

0.565
  recA Streptococcus pyogenes NZ131

62.006

88.441

0.548
  recA Streptococcus pneumoniae D39

61.329

88.978

0.546
  recA Streptococcus pneumoniae TIGR4

61.329

88.978

0.546
  recA Lactococcus lactis subsp. cremoris KW2

61.329

88.978

0.546
  recA Streptococcus pneumoniae Rx1

61.329

88.978

0.546
  recA Streptococcus pneumoniae R6

61.329

88.978

0.546
  recA Streptococcus mitis SK321

61.027

88.978

0.543
  recA Streptococcus mitis NCTC 12261

61.027

88.978

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

86.29

0.53