Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R6U80_RS06515 Genome accession   NZ_CP137623
Coordinates   1318674..1319318 (-) Length   214 a.a.
NCBI ID   WP_250645380.1    Uniprot ID   -
Organism   Lactococcus lactis strain NCK401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1313674..1324318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS06485 (R6U80_06485) - 1313788..1314393 (-) 606 WP_011915229.1 NADPH-dependent FMN reductase -
  R6U80_RS06490 (R6U80_06490) - 1314409..1315332 (-) 924 WP_082225076.1 FAD:protein FMN transferase -
  R6U80_RS06495 (R6U80_06495) - 1315513..1316565 (-) 1053 WP_081199722.1 BMP family protein -
  R6U80_RS06500 (R6U80_06500) - 1316628..1317107 (-) 480 WP_058224687.1 nucleoside 2-deoxyribosyltransferase -
  R6U80_RS06505 (R6U80_06505) - 1317091..1317645 (-) 555 WP_058220898.1 TIGR00730 family Rossman fold protein -
  R6U80_RS06510 (R6U80_06510) - 1317648..1318298 (-) 651 WP_313792032.1 deoxynucleoside kinase -
  R6U80_RS06515 (R6U80_06515) recA 1318674..1319318 (-) 645 WP_250645380.1 hypothetical protein Machinery gene
  R6U80_RS06520 (R6U80_06520) - 1319618..1320355 (-) 738 WP_004257908.1 MIP/aquaporin family protein -
  R6U80_RS06525 (R6U80_06525) glpO 1320407..1322236 (-) 1830 WP_044009675.1 type 1 glycerol-3-phosphate oxidase -
  R6U80_RS06530 (R6U80_06530) glpK 1322273..1323769 (-) 1497 WP_023189229.1 glycerol kinase GlpK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23760.55 Da        Isoelectric Point: 9.7581

>NTDB_id=822671 R6U80_RS06515 WP_250645380.1 1318674..1319318(-) (recA) [Lactococcus lactis strain NCK401]
MIFVQPDTGEEAFNMINEFIKTGAFDLIVVDSVAALTPTLEIDGVSIPGQQAKMMSEQLSKLVSKVNQTKTVIIFINQVR
STMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKTTLHTVKNKVSAPYKKPTVINVFGDGFSQEIDVVT
LAIQMGVVKKMNEWYSFNGQKLGRGIFSVKEYLASHQFVFETLKNLTRESLQFF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=822671 R6U80_RS06515 WP_250645380.1 1318674..1319318(-) (recA) [Lactococcus lactis strain NCK401]
TTGATATTCGTTCAACCAGATACAGGCGAAGAGGCCTTCAATATGATTAACGAGTTTATCAAAACAGGGGCCTTTGATTT
AATTGTTGTCGATTCGGTTGCTGCTCTGACACCTACTTTAGAGATAGATGGAGTGAGTATTCCAGGTCAGCAAGCTAAAA
TGATGTCAGAACAGCTCTCTAAGCTCGTTTCAAAAGTCAATCAGACGAAGACCGTCATCATCTTCATCAATCAAGTGCGT
TCAACCATGAGTGGACTATTCTTAAATAAAGAAACCACTCCAGGAGGGTCAGCACTAAAATTTTATTCTTCTGTACGAAT
TGAAGTAAAATCAGGAGAAAAAATTAAAGATGGAATTGATACTATTGGTAAGAAAACCACGCTTCATACCGTTAAGAATA
AAGTGTCAGCTCCTTATAAAAAGCCAACTGTCATTAATGTCTTTGGGGATGGATTTTCTCAAGAAATAGATGTTGTCACA
TTAGCGATTCAAATGGGTGTGGTTAAGAAGATGAACGAATGGTACTCGTTTAATGGTCAGAAGTTAGGTCGTGGAATTTT
TAGCGTTAAGGAATACCTAGCAAGTCATCAATTTGTTTTTGAAACGCTTAAAAACTTAACCAGAGAATCGCTGCAATTTT
TCTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(2-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

43.636

100

0.449
  recA Streptococcus mitis NCTC 12261

43.182

100

0.444
  recA Streptococcus thermophilus LMD-9

44.186

100

0.444
  recA Streptococcus thermophilus LMG 18311

44.186

100

0.444
  recA Streptococcus pyogenes NZ131

43.721

100

0.439
  recA Streptococcus mutans UA159

43.721

100

0.439
  recA Lactococcus lactis subsp. cremoris KW2

42.857

100

0.435
  recA Streptococcus pneumoniae R36A

42.791

100

0.43
  recA Streptococcus pneumoniae Rx1

42.791

100

0.43
  recA Streptococcus pneumoniae D39

42.791

100

0.43
  recA Streptococcus pneumoniae R6

42.791

100

0.43
  recA Streptococcus pneumoniae TIGR4

42.791

100

0.43
  recA Bacillus subtilis subsp. subtilis str. 168

42.453

99.065

0.421
  recA Staphylococcus aureus strain ATCC 12600

42.056

100

0.421
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

40.909

100

0.421
  recA Vibrio cholerae O1 biovar El Tor strain E7946

41.121

100

0.411
  recA Vibrio cholerae strain A1552

41.121

100

0.411
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.627

97.664

0.407
  recA Latilactobacillus sakei subsp. sakei 23K

42.029

96.729

0.407
  recA Acinetobacter baylyi ADP1

39.252

100

0.393
  recA Ralstonia pseudosolanacearum GMI1000

39.252

100

0.393
  recA Acinetobacter baumannii D1279779

39.252

100

0.393
  recA Acinetobacter nosocomialis M2

38.785

100

0.388
  recA Glaesserella parasuis strain SC1401

38.318

100

0.383
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.441

98.598

0.369
  recA Helicobacter pylori 26695

36.279

100

0.364
  recA Helicobacter pylori strain NCTC11637

36.279

100

0.364