Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QE177_RS03860 Genome accession   NZ_CP123499
Coordinates   913658..914728 (+) Length   356 a.a.
NCBI ID   WP_280551412.1    Uniprot ID   A0AA95GLK0
Organism   Arsenophonus sp. aPb     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 908658..919728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE177_RS03840 (QE177_03840) aroL 909078..909599 (+) 522 WP_280551408.1 shikimate kinase AroL -
  QE177_RS03845 (QE177_03845) aas 909682..911829 (+) 2148 WP_280551409.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  QE177_RS03850 (QE177_03850) lplT 911829..913040 (+) 1212 WP_280551410.1 lysophospholipid transporter LplT -
  QE177_RS03855 (QE177_03855) pncC 913046..913552 (+) 507 WP_280551411.1 nicotinamide-nucleotide amidase -
  QE177_RS03860 (QE177_03860) recA 913658..914728 (+) 1071 WP_280551412.1 recombinase RecA Machinery gene
  QE177_RS03865 (QE177_03865) alaS 915489..918122 (+) 2634 WP_280551413.1 alanine--tRNA ligase -
  QE177_RS03870 (QE177_03870) csrA 918345..918530 (+) 186 WP_026822683.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38414.09 Da        Isoelectric Point: 5.1847

>NTDB_id=821211 QE177_RS03860 WP_280551412.1 913658..914728(+) (recA) [Arsenophonus sp. aPb]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVIG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIYSELIDLGVKYKLIEKAGAWYSYNGEKIGQGKANATVYLKERPKIYTEL
DKKLRAMLLNHAGEFSSAASDFVTEAVEETSLPEEF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=821211 QE177_RS03860 WP_280551412.1 913658..914728(+) (recA) [Arsenophonus sp. aPb]
ATGGCTATTGATGAAAACAAACAGAAAGCACTTGCTGCCGCATTGGGTCAAATTGAAAAGCAATTTGGTAAAGGATCAAT
TATGCGCTTAGGTGAAGATCGTTCTATGGATGTAGAAACTATCTCTACCGGTTCATTATCTCTTGATGTTGCCTTAGGTG
CAGGAGGCTTGCCATTAGGTCGTATTGTTGAAATTTATGGCCCAGAATCTTCCGGTAAGACCACGTTAACATTACAGGTC
ATTGCTGCAGCTCAACGTGAAGGTAAGACTTGTGCTTTTATTGACGCAGAACACGCTTTAGATCCTATTTATGCCAAAAA
ACTTGGCGTTGATATTGATAATTTACTTTGCTCACAGCCGGATACGGGTGAACAAGCACTGGAGATTTGTGATGCTTTAA
CACGGTCTGGGGCGGTAGATGTTATTATTGTTGATTCTGTAGCGGCTTTAACACCAAAAGCTGAAATTGAAGGTGAAATT
GGTGATTCACATATGGGATTAGCTGCTCGTATGATGAGTCAAGCGATGCGTAAGTTAGCCGGAAATTTAAAAAATTCTAA
TACGCTATTAATTTTTATTAATCAAATCCGAATGAAAATTGGCGTTATGTTTGGCAATCCTGAAACAACAACCGGTGGAA
ATGCGTTAAAATTTTATGCTTCAGTGCGCCTTGATATCCGACGTATTGGTTCCGTCAAAAATGGTGAAGAAGTTATTGGT
AGCGAAACGCGCGTTAAAGTAGTAAAAAATAAGGTTGCGGCTCCTTTTAAACAAGCAGAGTTTCAAATCCTGTATGGAGA
GGGGATTAACATCTATAGTGAACTTATCGATCTAGGTGTGAAATATAAATTGATTGAAAAAGCGGGGGCTTGGTATAGCT
ATAATGGTGAGAAGATAGGTCAAGGCAAAGCAAATGCGACAGTCTATTTGAAAGAACGCCCGAAAATTTATACTGAATTA
GATAAAAAATTACGCGCTATGTTGCTTAATCATGCTGGTGAATTTAGTAGTGCTGCTTCTGATTTTGTAACAGAAGCGGT
AGAGGAAACTTCATTACCAGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

79.944

100

0.806
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.944

100

0.806
  recA Acinetobacter baylyi ADP1

70.17

98.876

0.694
  recA Pseudomonas stutzeri DSM 10701

75.229

91.854

0.691
  recA Glaesserella parasuis strain SC1401

69.034

98.876

0.683
  recA Acinetobacter baumannii D1279779

71.865

91.854

0.66
  recA Neisseria gonorrhoeae MS11

69.632

91.573

0.638
  recA Neisseria gonorrhoeae MS11

69.632

91.573

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.632

91.573

0.638
  recA Ralstonia pseudosolanacearum GMI1000

69.775

87.36

0.61
  recA Streptococcus mitis NCTC 12261

58.757

99.438

0.584
  recA Helicobacter pylori 26695

62.883

91.573

0.576
  recA Helicobacter pylori strain NCTC11637

62.577

91.573

0.573
  recA Streptococcus pneumoniae R6

62.346

91.011

0.567
  recA Streptococcus pneumoniae TIGR4

62.346

91.011

0.567
  recA Streptococcus pneumoniae Rx1

62.346

91.011

0.567
  recA Streptococcus pneumoniae D39

62.346

91.011

0.567
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

91.011

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.35

91.573

0.562
  recA Lactococcus lactis subsp. cremoris KW2

61.728

91.011

0.562
  recA Streptococcus mutans UA159

61.538

91.292

0.562
  recA Streptococcus pyogenes NZ131

61.538

91.292

0.562
  recA Streptococcus mitis SK321

61.043

91.573

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

62.187

89.888

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

93.258

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.692

91.292

0.545