Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QAO71_RS12305 Genome accession   NZ_CP123445
Coordinates   2598275..2599312 (-) Length   345 a.a.
NCBI ID   WP_280164546.1    Uniprot ID   -
Organism   Halopseudomonas sp. SMJS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2593275..2604312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO71_RS12285 (QAO71_12285) - 2595994..2596374 (-) 381 WP_280164544.1 diacylglycerol kinase -
  QAO71_RS12290 (QAO71_12290) - 2596377..2597048 (-) 672 WP_280164545.1 response regulator transcription factor -
  QAO71_RS12295 (QAO71_12295) - 2597384..2597782 (+) 399 WP_036988539.1 PA3611 family quorum-sensing-regulated virulence factor -
  QAO71_RS12300 (QAO71_12300) - 2597815..2598207 (-) 393 WP_280165685.1 regulatory protein RecX -
  QAO71_RS12305 (QAO71_12305) recA 2598275..2599312 (-) 1038 WP_280164546.1 recombinase RecA Machinery gene
  QAO71_RS12310 (QAO71_12310) - 2599533..2600045 (-) 513 WP_036988531.1 nicotinamide-nucleotide amidohydrolase family protein -
  QAO71_RS12315 (QAO71_12315) mutS 2600133..2602708 (+) 2576 Protein_2402 DNA mismatch repair protein MutS -
  QAO71_RS12320 (QAO71_12320) fdxA 2602852..2603175 (+) 324 WP_280164547.1 ferredoxin FdxA -
  QAO71_RS12325 (QAO71_12325) - 2603293..2603772 (-) 480 WP_280164548.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36888.07 Da        Isoelectric Point: 5.7556

>NTDB_id=821140 QAO71_RS12305 WP_280164546.1 2598275..2599312(-) (recA) [Halopseudomonas sp. SMJS2]
MDDNKKKALSAALSQIERQFGKGAVMRMGDHERQAIPSISTGSLGLDIALGLGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGDMGD
HHVGVQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKEGDEVIGSE
TRVKVVKNKVAPPFRQAEFQILYGTGIYHNAEIIDLGVQIGQIEKSGAWYSYKSNKIGQGKANAAKFLADNPQIADEIEK
AIRDELLPKASSKTAAVEENADLDG

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=821140 QAO71_RS12305 WP_280164546.1 2598275..2599312(-) (recA) [Halopseudomonas sp. SMJS2]
ATGGACGACAACAAGAAGAAGGCGCTTTCAGCGGCTTTGAGTCAGATTGAACGTCAATTTGGCAAGGGTGCGGTCATGCG
CATGGGCGACCACGAGCGTCAGGCGATCCCGTCGATCTCCACCGGCTCGCTGGGCCTGGATATCGCCCTGGGCCTGGGCG
GTCTGCCCAAGGGCCGGATCGTCGAGATCTACGGTCCGGAATCATCCGGTAAAACCACGCTGACCTTGTCGGTTATTGCC
CAGGCGCAGAAAAGCGGCGCCACCTGCGCCTTCGTCGATGCCGAGCACGCGCTCGATCCGGAGTACGCCGGCAAGCTGGG
CGTGAATGTGGATGACCTCCTGGTGTCCCAGCCGGATACCGGTGAGCAGGCACTGGAAATCACCGATATGCTGGTGCGCT
CCAACGCCGTGGACGTGATCATCGTCGACTCCGTGGCGGCACTGGTGCCCAAGGCCGAAATCGAAGGCGACATGGGTGAC
CACCACGTCGGCGTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAGATTACCGGTAACATCAAGAACGCCAACTGTCT
GGTGATCTTCATCAACCAGATTCGCATGAAGATCGGCGTCATGTTCGGCAACCCGGAAACCACCACCGGCGGTAACGCGC
TGAAGTTCTACTCCTCGGTGCGTCTGGATATTCGCCGCACCGGTGCGGTGAAGGAAGGCGACGAGGTGATCGGCAGCGAA
ACCCGAGTCAAGGTAGTGAAGAACAAGGTGGCACCGCCGTTCCGTCAGGCTGAGTTCCAGATTCTGTATGGCACCGGTAT
CTATCATAATGCCGAGATCATCGACCTGGGCGTGCAGATCGGTCAGATCGAGAAGTCCGGCGCCTGGTACAGCTACAAGA
GCAACAAGATCGGGCAGGGCAAGGCCAATGCGGCCAAGTTCCTGGCTGACAACCCGCAGATCGCCGATGAGATCGAAAAG
GCCATCCGTGATGAGTTGCTTCCCAAGGCCAGCAGCAAGACGGCTGCGGTCGAAGAGAATGCCGATCTTGACGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

85.838

100

0.861
  recA Acinetobacter baylyi ADP1

73.988

100

0.742
  recA Glaesserella parasuis strain SC1401

71.221

99.71

0.71
  recA Acinetobacter baumannii D1279779

70.93

99.71

0.707
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.171

94.783

0.684
  recA Vibrio cholerae strain A1552

72.171

94.783

0.684
  recA Neisseria gonorrhoeae MS11

71.914

93.913

0.675
  recA Neisseria gonorrhoeae MS11

71.914

93.913

0.675
  recA Neisseria gonorrhoeae strain FA1090

71.914

93.913

0.675
  recA Ralstonia pseudosolanacearum GMI1000

68.955

97.101

0.67
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

94.783

0.623
  recA Streptococcus mutans UA159

59.091

100

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.424

97.681

0.6
  recA Helicobacter pylori strain NCTC11637

62.08

94.783

0.588
  recA Helicobacter pylori 26695

62.08

94.783

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

93.043

0.577
  recA Streptococcus pyogenes NZ131

60

94.203

0.565
  recA Streptococcus mitis NCTC 12261

60.062

93.623

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

93.043

0.562
  recA Streptococcus pneumoniae TIGR4

59.509

94.493

0.562
  recA Streptococcus pneumoniae R6

59.509

94.493

0.562
  recA Streptococcus pneumoniae Rx1

59.509

94.493

0.562
  recA Streptococcus pneumoniae D39

59.509

94.493

0.562
  recA Streptococcus mitis SK321

59.443

93.623

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.79

93.913

0.533
  recA Lactococcus lactis subsp. cremoris KW2

56.347

93.623

0.528