Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QEG98_RS07880 Genome accession   NZ_CP123278
Coordinates   1663473..1664501 (-) Length   342 a.a.
NCBI ID   WP_316567848.1    Uniprot ID   A0AA96XZI3
Organism   Myxococcus sp. MxC21-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658473..1669501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEG98_RS07860 (QEG98_08015) pssA 1659141..1660006 (+) 866 Protein_1554 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  QEG98_RS07865 (QEG98_08020) - 1660118..1661380 (+) 1263 Protein_1555 CinA family nicotinamide mononucleotide deamidase-related protein -
  QEG98_RS07870 (QEG98_08025) - 1661377..1662909 (+) 1533 WP_316566274.1 hypothetical protein -
  QEG98_RS07875 (QEG98_08030) - 1662967..1663476 (+) 510 WP_186817702.1 DUF1285 domain-containing protein -
  QEG98_RS07880 (QEG98_08035) recA 1663473..1664501 (-) 1029 WP_316567848.1 recombinase RecA Machinery gene
  QEG98_RS07885 (QEG98_08040) - 1664795..1666180 (+) 1386 WP_316566275.1 NAD(P)/FAD-dependent oxidoreductase -
  QEG98_RS07890 (QEG98_08045) - 1666196..1667839 (-) 1644 WP_316566276.1 YifB family Mg chelatase-like AAA ATPase -
  QEG98_RS07895 (QEG98_08050) - 1668037..1668711 (+) 675 WP_316566277.1 hypothetical protein -
  QEG98_RS07900 (QEG98_08055) - 1668612..1669235 (-) 624 WP_090484466.1 DUF2378 family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36027.31 Da        Isoelectric Point: 7.5192

>NTDB_id=820329 QEG98_RS07880 WP_316567848.1 1663473..1664501(-) (recA) [Myxococcus sp. MxC21-1]
MSKLAEKLKAVAAAVASIEKQFGRGSVMALGGEAREQRVAVIPSGSVGVDRALGVGGYPRGRVVEVFGNESSGKTTLTLH
AIAQVQAAGGVAAFIDAEHALDVSYARKLGVRVEELLVSQPDTGEQALEITEHLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNIKDGDAVV
GSKARVKVVKNKVAPPFQEAEFDLMYGSGIHRVGEVLDLGVATGLIEKSGSHFSLRGERIGQGRERAAEWLREHPDVLEA
LGKEITGTSALPSSPAPVEVAA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=820329 QEG98_RS07880 WP_316567848.1 1663473..1664501(-) (recA) [Myxococcus sp. MxC21-1]
ATGAGCAAGCTGGCGGAGAAGCTGAAGGCGGTGGCGGCGGCGGTAGCGAGCATCGAGAAGCAGTTCGGACGAGGCTCGGT
GATGGCGTTGGGCGGGGAAGCGCGCGAACAGAGGGTCGCCGTCATCCCCTCTGGCTCGGTGGGAGTGGACCGCGCGCTGG
GCGTGGGCGGCTATCCCCGGGGCCGTGTGGTGGAGGTCTTCGGGAACGAGTCCTCGGGCAAGACGACGCTCACCCTGCAT
GCGATTGCACAGGTGCAGGCGGCGGGTGGCGTGGCGGCCTTCATCGACGCGGAGCACGCGCTGGATGTGTCCTACGCGCG
AAAGCTGGGCGTCCGGGTGGAGGAGTTGCTCGTGTCGCAACCCGACACCGGCGAACAGGCGCTGGAAATCACGGAGCACC
TTGTGCGCTCCGGCGCGGTGGACCTCATCGTCGTCGACTCGGTGGCGGCCCTGGTGCCACGGGCCGAAATCGAGGGCGAG
ATGGGGGACGCGCACATGGGCGTCCAGGCGAGGCTGATGAGTCAGGCGCTGCGCAAGCTGACGGGCGCGGTGAGCCGCTC
GGGCACGTGCATCATCTTCATCAACCAGATTCGGATGAAGATTGGCGTGATGTTCGGCAATCCGGAAACCACCACGGGTG
GCAATGCGCTGAAGTTCTACGCATCCGTGCGGATGGAGATTCGCCGCACGGGCAACATCAAGGACGGTGATGCCGTCGTG
GGCTCGAAGGCGCGCGTGAAGGTGGTGAAGAACAAGGTCGCCCCGCCCTTCCAGGAAGCGGAGTTCGACCTCATGTATGG
CAGCGGCATCCACCGCGTGGGGGAAGTGCTCGACCTCGGCGTGGCCACGGGCCTCATCGAGAAGTCGGGGAGTCACTTCA
GCCTGCGCGGCGAACGCATCGGCCAGGGCCGGGAGCGCGCCGCCGAGTGGCTGCGCGAACATCCCGACGTGCTGGAAGCG
CTGGGCAAGGAGATTACGGGGACTTCCGCCCTGCCCTCCTCGCCCGCGCCGGTAGAGGTCGCGGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.01

91.52

0.632
  recA Pseudomonas stutzeri DSM 10701

65.312

93.567

0.611
  recA Glaesserella parasuis strain SC1401

62.462

97.368

0.608
  recA Vibrio cholerae strain A1552

64.263

93.275

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.263

93.275

0.599
  recA Neisseria gonorrhoeae MS11

63.75

93.567

0.596
  recA Neisseria gonorrhoeae strain FA1090

63.75

93.567

0.596
  recA Neisseria gonorrhoeae MS11

63.75

93.567

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

63.354

94.152

0.596
  recA Acinetobacter baylyi ADP1

61.261

97.368

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

59.226

98.246

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.923

95.029

0.579
  recA Acinetobacter baumannii D1279779

61.755

93.275

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.752

94.444

0.564
  recA Helicobacter pylori 26695

59.006

94.152

0.556
  recA Helicobacter pylori strain NCTC11637

58.696

94.152

0.553
  recA Lactococcus lactis subsp. cremoris KW2

56.798

96.784

0.55
  recA Streptococcus pneumoniae D39

57.846

95.029

0.55
  recA Streptococcus pneumoniae R6

57.846

95.029

0.55
  recA Streptococcus pneumoniae TIGR4

57.846

95.029

0.55
  recA Streptococcus pneumoniae Rx1

57.846

95.029

0.55
  recA Streptococcus pyogenes NZ131

57.099

94.737

0.541
  recA Streptococcus mitis SK321

56.923

95.029

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.786

91.52

0.538
  recA Streptococcus mitis NCTC 12261

56.615

95.029

0.538
  recA Streptococcus mutans UA159

56.173

94.737

0.532