Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QEG98_RS07560 Genome accession   NZ_CP123278
Coordinates   1594545..1595636 (+) Length   363 a.a.
NCBI ID   WP_090484573.1    Uniprot ID   -
Organism   Myxococcus sp. MxC21-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1589545..1600636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEG98_RS07535 (QEG98_07685) - 1589856..1590062 (+) 207 WP_011551501.1 hypothetical protein -
  QEG98_RS07540 (QEG98_07690) glmU 1590062..1591474 (+) 1413 WP_410478062.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  QEG98_RS07545 (QEG98_07695) glmS 1591582..1593417 (+) 1836 WP_090484575.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  QEG98_RS07550 (QEG98_07700) - 1593648..1593836 (+) 189 WP_316566231.1 hypothetical protein -
  QEG98_RS07555 (QEG98_07705) - 1593824..1594432 (+) 609 WP_316566232.1 hypothetical protein -
  QEG98_RS07560 (QEG98_07710) recA 1594545..1595636 (+) 1092 WP_090484573.1 recombinase RecA Machinery gene
  QEG98_RS07565 (QEG98_07715) - 1595801..1598026 (+) 2226 WP_316567846.1 alkaline phosphatase D family protein -
  QEG98_RS07570 (QEG98_07720) - 1598229..1598786 (+) 558 WP_141253498.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38990.70 Da        Isoelectric Point: 6.8710

>NTDB_id=820328 QEG98_RS07560 WP_090484573.1 1594545..1595636(+) (recA) [Myxococcus sp. MxC21-1]
MAVNQEKEKAIELAMSAVERQFGKGSIMRLGNDEPLMRDVQAIPTGSISLDIALGVGGVPKGRIIEIFGPESSGKTTLCL
HIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGDNV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFSFNGERIGQGRENVKDYLREHPEIAK
DIEGRVLEKYGIGKSGAPVAAAPDESAPAEGGSEKRGRVKAVK

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=820328 QEG98_RS07560 WP_090484573.1 1594545..1595636(+) (recA) [Myxococcus sp. MxC21-1]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAACTGGCGATGTCCGCGGTGGAGCGCCAGTTCGGCAAGGGGTCCAT
CATGCGGCTCGGCAACGACGAGCCGCTGATGCGAGACGTTCAGGCCATCCCGACGGGCTCCATCTCGCTGGACATCGCCC
TGGGCGTGGGTGGCGTGCCCAAGGGCCGCATCATCGAAATCTTCGGGCCGGAGTCGTCCGGTAAGACGACGCTGTGTCTC
CACATCGTCGCCGAAGCGCAGAAGCGCGGCGGCATCTGCGGCTACGTGGACGCGGAGCACGCGCTGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGATGACCTGCTGCTGAGCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCGGAGA
TGCTGGTGCGCTCGGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAGCTCGAGGGT
GAGATGGGCGACGCGCACATGGGTGTGCAGGCCCGCCTCATGAGCCAGGCGCTCCGCAAGCTGACGGGCACCATCTCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATTCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACGACGG
GCGGTAACGCGCTGAAGTTCTACGCGTCGCAGCGCCTGGACATCCGCCGCATCGGCGCCATCAAGAATGGCGACAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTGGTGAAGAACAAGGTCGCGCCGCCGTTCAAGGAAGTCGAGTTCGACATCATGTA
CGGCACGGGCATCTCCCGTGAGGGCGACCTCATCGACCTCGCCTCCAACGAGAACATCGTGGAGAAGAGCGGCAGCTGGT
TCTCCTTCAACGGTGAGCGCATCGGACAGGGCCGGGAGAACGTGAAGGACTACCTGCGCGAGCACCCGGAGATTGCCAAG
GACATCGAAGGCCGCGTGCTGGAGAAGTACGGCATCGGCAAGTCGGGTGCGCCCGTAGCCGCGGCGCCGGACGAGTCCGC
GCCGGCCGAAGGTGGCAGCGAGAAGCGCGGCCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.827

89.256

0.614
  recA Acinetobacter baumannii D1279779

63.112

95.592

0.603
  recA Pseudomonas stutzeri DSM 10701

65.758

90.909

0.598
  recA Acinetobacter baylyi ADP1

62.428

95.317

0.595
  recA Vibrio cholerae strain A1552

65.951

89.807

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.951

89.807

0.592
  recA Glaesserella parasuis strain SC1401

61.988

94.215

0.584
  recA Helicobacter pylori strain NCTC11637

60.405

95.317

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

60.933

94.49

0.576
  recA Neisseria gonorrhoeae strain FA1090

64.506

89.256

0.576
  recA Neisseria gonorrhoeae MS11

64.506

89.256

0.576
  recA Neisseria gonorrhoeae MS11

64.506

89.256

0.576
  recA Helicobacter pylori 26695

59.827

95.317

0.57
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

91.185

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

61.934

91.185

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.272

89.256

0.565
  recA Streptococcus mitis NCTC 12261

57.345

97.521

0.559
  recA Streptococcus pneumoniae Rx1

61.329

91.185

0.559
  recA Streptococcus pneumoniae D39

61.329

91.185

0.559
  recA Streptococcus pneumoniae R6

61.329

91.185

0.559
  recA Streptococcus pneumoniae TIGR4

61.329

91.185

0.559
  recA Streptococcus mitis SK321

59.819

91.185

0.545
  recA Streptococcus pyogenes NZ131

60

90.909

0.545
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

91.185

0.543
  recA Streptococcus mutans UA159

58.912

91.185

0.537
  recA Lactococcus lactis subsp. cremoris KW2

58.006

91.185

0.529