Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P7V53_RS30815 Genome accession   NZ_CP123228
Coordinates   6504350..6505438 (-) Length   362 a.a.
NCBI ID   WP_280153295.1    Uniprot ID   -
Organism   Piscinibacter sp. XHJ-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6499350..6510438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7V53_RS30790 - 6500023..6500727 (-) 705 WP_280153290.1 TerC family protein -
  P7V53_RS30795 sucD 6500870..6501763 (-) 894 WP_280153291.1 succinate--CoA ligase subunit alpha -
  P7V53_RS30800 sucC 6501793..6502956 (-) 1164 WP_280153292.1 ADP-forming succinate--CoA ligase subunit beta -
  P7V53_RS30805 - 6503001..6503573 (-) 573 WP_280153293.1 DUF2889 domain-containing protein -
  P7V53_RS30810 - 6503745..6504323 (-) 579 WP_280153294.1 regulatory protein RecX -
  P7V53_RS30815 recA 6504350..6505438 (-) 1089 WP_280153295.1 recombinase RecA Machinery gene
  P7V53_RS30820 - 6505589..6506260 (+) 672 WP_280153296.1 response regulator transcription factor -
  P7V53_RS30825 - 6506336..6507787 (+) 1452 WP_280156649.1 sensor histidine kinase -
  P7V53_RS30830 rodA 6507830..6508984 (-) 1155 WP_280153297.1 rod shape-determining protein RodA -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38731.51 Da        Isoelectric Point: 4.8730

>NTDB_id=820110 P7V53_RS30815 WP_280153295.1 6504350..6505438(-) (recA) [Piscinibacter sp. XHJ-5]
MDAPVKALNTEKAKALQAALAQIEKQFGKGSIMRLGEGEVIEDIEVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVVAEMQKLGGTCAFIDAEHALDVQYAQKLGVNLQELLISQPDTGEQALEIVDALVRSGSVDLVVIDSVAALTPKA
EIEGEMGDALPGLQARLMSQALRKLTGTIKKTNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKK
GEEVIGNETKVKVVKNKVSPPFKTAEFDILYGEGISREGEIIDMGVEARVLEKSGAWYAYQGEKIGQGKDNAREFLRENP
ELAVEIENKVREELGIPLRAAGEAAEAGEAEAKPARGKAAKE

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=820110 P7V53_RS30815 WP_280153295.1 6504350..6505438(-) (recA) [Piscinibacter sp. XHJ-5]
ATGGACGCACCCGTCAAAGCCCTGAACACCGAAAAAGCCAAGGCCTTGCAGGCGGCGCTGGCGCAAATAGAAAAGCAGTT
CGGCAAGGGCTCGATCATGCGCCTCGGCGAAGGCGAGGTCATCGAGGACATCGAAGTCGTCTCCACCGGATCACTGGGTC
TCGACATCGCGTTGGGCGTCGGCGGACTGCCGCGCGGGCGCGTCGTCGAAATCTACGGCCCCGAGTCCAGCGGCAAGACC
ACGCTCACGCTGCAGGTCGTCGCCGAAATGCAGAAGCTGGGCGGCACTTGCGCCTTCATCGACGCCGAGCATGCGCTCGA
TGTGCAGTACGCGCAGAAGCTCGGCGTGAACCTGCAGGAGCTGCTGATCTCGCAGCCCGACACCGGCGAGCAGGCGCTCG
AGATCGTCGATGCCCTGGTGCGCTCCGGCTCGGTCGACCTGGTGGTCATCGACTCGGTCGCCGCGCTCACGCCCAAGGCC
GAAATCGAAGGCGAAATGGGCGACGCACTCCCGGGCCTGCAAGCCCGGCTCATGAGCCAGGCGCTGCGCAAGCTCACCGG
CACGATCAAGAAGACCAACACCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTTCGCCCG
AAACCACCACCGGCGGCAATGCGCTGAAGTTCTATGCCTCGGTGCGGCTGGACATCCGCCGCATCGGCAGCATCAAGAAG
GGCGAGGAGGTCATCGGCAACGAGACCAAGGTCAAGGTCGTCAAGAACAAGGTCTCGCCTCCGTTCAAGACCGCAGAGTT
CGACATCCTCTACGGTGAAGGCATCAGCCGCGAAGGCGAAATCATCGACATGGGCGTCGAAGCCAGGGTGCTCGAGAAGA
GCGGTGCCTGGTATGCCTATCAGGGGGAGAAGATCGGCCAGGGCAAGGACAACGCACGCGAGTTCCTGCGCGAGAACCCG
GAGCTCGCCGTAGAAATCGAGAACAAGGTGCGCGAAGAACTCGGCATCCCGCTGCGCGCCGCCGGCGAAGCGGCCGAGGC
GGGTGAAGCCGAGGCCAAGCCCGCGCGCGGCAAGGCAGCCAAGGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.721

95.028

0.796
  recA Neisseria gonorrhoeae MS11

72.892

91.713

0.669
  recA Neisseria gonorrhoeae MS11

72.892

91.713

0.669
  recA Neisseria gonorrhoeae strain FA1090

72.892

91.713

0.669
  recA Acinetobacter baylyi ADP1

68.588

95.856

0.657
  recA Pseudomonas stutzeri DSM 10701

71.865

90.331

0.649
  recA Vibrio cholerae strain A1552

70.909

91.16

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.909

91.16

0.646
  recA Glaesserella parasuis strain SC1401

71.605

89.503

0.641
  recA Acinetobacter baumannii D1279779

70.642

90.331

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.674

91.436

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.431

94.751

0.61
  recA Helicobacter pylori 26695

66.061

91.16

0.602
  recA Helicobacter pylori strain NCTC11637

65.758

91.16

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

65.749

90.331

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

64.724

90.055

0.583
  recA Lactococcus lactis subsp. cremoris KW2

61.471

93.923

0.577
  recA Streptococcus mutans UA159

60.417

92.818

0.561
  recA Streptococcus mitis SK321

59.706

93.923

0.561
  recA Streptococcus mitis NCTC 12261

59.706

93.923

0.561
  recA Streptococcus pneumoniae Rx1

60.597

92.541

0.561
  recA Streptococcus pneumoniae D39

60.597

92.541

0.561
  recA Streptococcus pneumoniae R6

60.597

92.541

0.561
  recA Streptococcus pneumoniae TIGR4

60.597

92.541

0.561
  recA Streptococcus pyogenes NZ131

60.299

92.541

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.027

91.436

0.558