Detailed information NTG0081923

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: RvVAT039_RS10955
• Genome accession: NZ_AP023268
• Coordinates: 2372334..2373422 (-)
• Length: 362 a.a.
• NCBI ID: WP_015916255.1
• Uniprot ID: B9JX56
• Organism: Agrobacterium vitis strain VAR03-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2367334..2378422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RvVAT039_RS10945 (RvVAR031_21750)	-	2367949..2368998 (-)	1050	WP_180637697.1	HWE histidine kinase domain-containing protein	-
RvVAT039_RS10950 (RvVAR031_21760)	alaS	2369501..2372164 (-)	2664	WP_180637698.1	alanine--tRNA ligase	-
RvVAT039_RS10955 (RvVAR031_21770)	recA	2372334..2373422 (-)	1089	WP_015916255.1	recombinase RecA	Machinery gene
RvVAT039_RS10960 (RvVAR031_21780)	-	2373669..2374628 (+)	960	WP_156540876.1	carbohydrate kinase family protein	-
RvVAT039_RS10965 (RvVAR031_21790)	-	2374631..2375554 (+)	924	WP_060717063.1	pseudouridine-5'-phosphate glycosidase	-
RvVAT039_RS10970 (RvVAR031_21800)	lexA	2375946..2376665 (+)	720	WP_060717064.1	transcriptional repressor LexA	-

Sequence

Protein

• Length: 362 a.a.
• Molecular weight: 38769.39 Da
• Isoelectric Point: 5.0624

>NTDB_id=81923 RvVAT039_RS10955 WP_015916255.1 2372334..2373422(-) (recA) [Agrobacterium vitis strain VAR03-1]
MSQNSLRLVEDKTVDKSKALEAALSQIERSFGKGSIMKLGANEKIVEVETVSTGSLSLDIALGIGGLPKGRIIEIYGPES
SGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAAL
TPKAEIEGEMGDSLPGMQARLMSQALRKLTGSISRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
AVKDREEIVGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKAGAWFSYNSQRLGQGRENAKIFL
RDNPAVADEIETALRQNAGLIAERFLENGGPDANDSVGLDDA

Nucleotide

• Length: 1089 bp

>NTDB_id=81923 RvVAT039_RS10955 WP_015916255.1 2372334..2373422(-) (recA) [Agrobacterium vitis strain VAR03-1]
ATGTCACAAAATTCTTTGCGGCTCGTAGAGGACAAAACGGTGGATAAAAGCAAGGCATTGGAAGCGGCCCTGTCGCAGAT
CGAGCGATCGTTCGGCAAGGGCTCGATCATGAAGCTCGGCGCGAACGAAAAAATCGTCGAGGTTGAAACCGTATCGACTG
GCTCTCTCAGCCTCGATATCGCGCTCGGCATTGGTGGTCTTCCCAAAGGCCGTATCATTGAAATTTATGGACCGGAAAGC
TCCGGTAAAACGACGCTTGCGTTGCAAACCATTGCCGAGGCCCAGAAAAAGGGCGGCGTTTGCGCTTTCGTCGATGCCGA
GCATGCGCTGGATCCGGTCTATGCCCGCAAACTGGGCGTCGATCTCCAGAATTTGCTGATCTCGCAGCCGGATACCGGCG
AGCAGGCACTGGAAATTACCGATACGCTGGTGCGTTCGGGCGCCATCGATGTGTTGGTGATCGACTCCGTCGCGGCCTTG
ACGCCGAAAGCTGAAATCGAAGGTGAAATGGGTGATAGCCTGCCGGGCATGCAGGCGCGGTTGATGAGCCAGGCGCTACG
CAAGCTGACGGGCTCGATTTCGCGTTCGAACTGCATGGTGGTTTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGT
TCGGTTCTCCGGAAACGACGACCGGCGGTAATGCTTTGAAGTTCTACGCTTCGGTTCGCCTCGATATTCGCCGTATCGGC
GCCGTCAAGGATCGCGAAGAAATCGTTGGTAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCCTTCAA
GCAGGTGGAATTCGACATCATGTATGGCGAAGGCGTGTCGAAGACCGGCGAATTGGTCGATCTGGGCGTCAAGGCCGGGA
TCGTTGAGAAGGCAGGGGCCTGGTTTTCCTATAATAGCCAGCGCTTGGGGCAGGGCCGGGAGAATGCCAAGATCTTCCTG
CGCGATAATCCTGCGGTTGCCGATGAAATCGAAACGGCACTTCGCCAGAATGCTGGTTTGATCGCCGAGCGTTTTCTTGA
AAACGGCGGCCCGGACGCCAATGACAGCGTCGGTCTTGACGACGCTTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (18-280)

3D structure

• AlphaFold DB: B9JX56

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Acinetobacter baumannii D1279779	72.981	88.95	0.649
recA	Acinetobacter baylyi ADP1	72.671	88.95	0.646
recA	Neisseria gonorrhoeae MS11	67.449	94.199	0.635
recA	Neisseria gonorrhoeae MS11	67.449	94.199	0.635
recA	Neisseria gonorrhoeae strain FA1090	67.449	94.199	0.635
recA	Vibrio cholerae strain A1552	68.657	92.541	0.635
recA	Vibrio cholerae O1 biovar El Tor strain E7946	68.657	92.541	0.635
recA	Glaesserella parasuis strain SC1401	67.647	93.923	0.635
recA	Ralstonia pseudosolanacearum GMI1000	71.975	86.74	0.624
recA	Pseudomonas stutzeri DSM 10701	68.536	88.674	0.608
recA	Helicobacter pylori strain NCTC11637	65.031	90.055	0.586
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.832	90.331	0.586
recA	Helicobacter pylori 26695	64.724	90.055	0.583
recA	Bacillus subtilis subsp. subtilis str. 168	64.11	90.055	0.577
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	63.609	90.331	0.575
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.261	91.989	0.564
recA	Latilactobacillus sakei subsp. sakei 23K	61.162	90.331	0.552
recA	Streptococcus mitis NCTC 12261	59.819	91.436	0.547
recA	Streptococcus mitis SK321	59.819	91.436	0.547
recA	Lactococcus lactis subsp. cremoris KW2	59.104	92.541	0.547
recA	Streptococcus pneumoniae R6	59.517	91.436	0.544
recA	Streptococcus pneumoniae Rx1	59.517	91.436	0.544
recA	Streptococcus pneumoniae D39	59.517	91.436	0.544
recA	Streptococcus pneumoniae TIGR4	59.517	91.436	0.544
recA	Streptococcus pyogenes NZ131	58.663	90.884	0.533
recA	Streptococcus mutans UA159	57.958	91.989	0.533