Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QBD29_RS10270 Genome accession   NZ_CP122960
Coordinates   2029442..2030530 (-) Length   362 a.a.
NCBI ID   WP_280098002.1    Uniprot ID   -
Organism   Amylibacter sp. IMCC11727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2024442..2035530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD29_RS10250 (QBD29_10250) - 2025309..2026082 (-) 774 WP_280097998.1 RNA methyltransferase -
  QBD29_RS10255 (QBD29_10255) - 2026089..2026373 (-) 285 WP_280097999.1 DUF1330 domain-containing protein -
  QBD29_RS10260 (QBD29_10260) - 2026373..2026657 (-) 285 WP_280098000.1 DUF1330 domain-containing protein -
  QBD29_RS10265 (QBD29_10265) alaS 2026660..2029311 (-) 2652 WP_280098001.1 alanine--tRNA ligase -
  QBD29_RS10270 (QBD29_10270) recA 2029442..2030530 (-) 1089 WP_280098002.1 recombinase RecA Machinery gene
  QBD29_RS10275 (QBD29_10275) - 2030760..2031359 (+) 600 WP_280098003.1 sulfotransferase family 2 domain-containing protein -
  QBD29_RS10280 (QBD29_10280) - 2031356..2033131 (-) 1776 WP_280098004.1 ATP-binding protein -
  QBD29_RS10285 (QBD29_10285) - 2033201..2034373 (-) 1173 WP_280098005.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38822.24 Da        Isoelectric Point: 4.9074

>NTDB_id=817543 QBD29_RS10270 WP_280098002.1 2029442..2030530(-) (recA) [Amylibacter sp. IMCC11727]
MATNLLDMTERKSMDKQKALESALGQIERQFGKGSIMKLGDNAVMDVEATSTGSIGLDIALGIGGIPKGRIIEIYGPESS
GKTTLTLHAIAEEQKSGGVCAFVDAEHALDPTYAKKLGVDLDELLISQPDAGEQALEITDTLVRSGAVSMVVVDSVAALT
PKSELEGDMGDHQVGAQARLMSQAMRKLTGSISKSKCTVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGA
IKDRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKRGELIDLGVKAGIVEKSGSWFSYGDQRIGQGRENAKNFLK
ENPGVAWEIEDKIRASHGLDFDMPKPEAEAAAADDSDDVLEA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=817543 QBD29_RS10270 WP_280098002.1 2029442..2030530(-) (recA) [Amylibacter sp. IMCC11727]
ATGGCGACGAACCTACTCGATATGACGGAAAGAAAGTCAATGGATAAGCAAAAAGCACTCGAATCTGCGCTCGGCCAAAT
TGAGCGGCAGTTCGGCAAAGGCTCCATCATGAAACTGGGCGACAATGCCGTCATGGATGTTGAGGCCACGTCTACTGGCT
CCATCGGTCTGGACATCGCGCTTGGTATTGGTGGCATCCCAAAAGGGCGCATTATTGAAATTTATGGCCCTGAAAGCTCT
GGTAAAACAACGCTGACCCTGCACGCCATTGCGGAAGAGCAGAAATCAGGCGGCGTATGTGCGTTTGTGGATGCGGAGCA
CGCGCTTGATCCAACTTATGCGAAAAAGCTTGGCGTTGATCTGGATGAACTGCTGATTTCACAGCCAGACGCGGGTGAAC
AAGCGCTTGAAATCACAGATACGCTGGTGCGTTCTGGTGCGGTTTCAATGGTTGTGGTCGATTCTGTGGCGGCGCTGACG
CCAAAATCAGAACTCGAAGGGGATATGGGCGACCACCAAGTGGGCGCGCAGGCCCGTCTGATGTCGCAAGCTATGCGCAA
ATTGACAGGCTCTATCAGCAAATCCAAATGCACCGTGATCTTTATTAACCAAATTCGGATGAAGATTGGTGTTATGTTCG
GTTCGCCTGAAACAACATCAGGCGGCAATGCGCTGAAATTTTACTCTTCTGTGCGTCTGGATATCCGCCGTATTGGCGCC
ATCAAGGATCGCGACGAAGTGGTGGGCAACGCCACCCGCGTGAAAGTTGTGAAAAACAAAGTGGCTCCGCCGTTCAAACA
GGTGGAATTCGACATCATGTACGGCGAAGGCATTTCCAAACGGGGCGAATTGATCGACCTTGGCGTGAAAGCGGGCATTG
TTGAAAAATCAGGTTCTTGGTTCTCTTATGGGGATCAACGCATCGGCCAAGGTCGTGAAAACGCGAAGAACTTCCTGAAA
GAAAACCCTGGCGTTGCATGGGAGATCGAAGATAAAATTCGCGCGTCCCATGGGCTCGATTTCGATATGCCAAAACCAGA
AGCCGAAGCCGCCGCTGCAGATGACAGCGACGACGTTTTGGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

67.449

94.199

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.449

94.199

0.635
  recA Neisseria gonorrhoeae MS11

68.976

91.713

0.633
  recA Neisseria gonorrhoeae MS11

68.976

91.713

0.633
  recA Neisseria gonorrhoeae strain FA1090

68.976

91.713

0.633
  recA Glaesserella parasuis strain SC1401

65.889

94.751

0.624
  recA Acinetobacter baylyi ADP1

64.387

96.961

0.624
  recA Pseudomonas stutzeri DSM 10701

69.782

88.674

0.619
  recA Helicobacter pylori strain NCTC11637

66.567

92.541

0.616
  recA Acinetobacter baumannii D1279779

69.375

88.398

0.613
  recA Ralstonia pseudosolanacearum GMI1000

70.607

86.464

0.61
  recA Helicobacter pylori 26695

65.97

92.541

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

90.055

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.278

90.331

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.178

90.055

0.605
  recA Lactococcus lactis subsp. cremoris KW2

61.29

94.199

0.577
  recA Streptococcus pyogenes NZ131

57.423

98.619

0.566
  recA Streptococcus mitis SK321

60.472

93.646

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

60.472

93.646

0.566
  recA Streptococcus mitis NCTC 12261

60.177

93.646

0.564
  recA Streptococcus pneumoniae R6

60.177

93.646

0.564
  recA Streptococcus pneumoniae TIGR4

60.177

93.646

0.564
  recA Streptococcus pneumoniae Rx1

60.177

93.646

0.564
  recA Streptococcus pneumoniae D39

60.177

93.646

0.564
  recA Streptococcus mutans UA159

59.05

93.094

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

89.227

0.536