Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QAP02_RS06550 Genome accession   NZ_CP122948
Coordinates   1365813..1366856 (-) Length   347 a.a.
NCBI ID   WP_000963114.1    Uniprot ID   A0AB72ZUC4
Organism   Helicobacter pylori strain BS21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1360813..1371856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP02_RS06520 (QAP02_06520) - 1361053..1362171 (+) 1119 WP_286463600.1 glycosyltransferase family 8 protein -
  QAP02_RS06525 (QAP02_06525) - 1362168..1363124 (-) 957 WP_286463601.1 PDC sensor domain-containing protein -
  QAP02_RS06530 (QAP02_06530) - 1363147..1363635 (-) 489 WP_286463603.1 shikimate kinase -
  QAP02_RS06535 (QAP02_06535) - 1363640..1364236 (-) 597 WP_017180532.1 AMIN domain-containing protein -
  QAP02_RS06540 (QAP02_06540) - 1364253..1364528 (-) 276 WP_000146212.1 hypothetical protein -
  QAP02_RS06545 (QAP02_06545) eno 1364521..1365801 (-) 1281 WP_286463605.1 phosphopyruvate hydratase -
  QAP02_RS06550 (QAP02_06550) recA 1365813..1366856 (-) 1044 WP_000963114.1 recombinase RecA Machinery gene
  QAP02_RS06555 (QAP02_06555) - 1366955..1367818 (+) 864 WP_286463611.1 menaquinone biosynthesis family protein -
  QAP02_RS06560 (QAP02_06560) - 1367815..1368582 (-) 768 WP_286463613.1 hypothetical protein -
  QAP02_RS06565 (QAP02_06565) - 1368671..1369252 (-) 582 WP_286463617.1 hypothetical protein -
  QAP02_RS06570 (QAP02_06570) - 1369265..1369849 (-) 585 WP_286463618.1 hypothetical protein -
  QAP02_RS06575 (QAP02_06575) - 1369950..1370156 (-) 207 WP_220928553.1 DUF4006 family protein -
  QAP02_RS06580 (QAP02_06580) ccoP 1370167..1371045 (-) 879 WP_286463620.1 cytochrome-c oxidase, cbb3-type subunit III -
  QAP02_RS06585 (QAP02_06585) - 1371047..1371265 (-) 219 WP_001860815.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37622.33 Da        Isoelectric Point: 5.5216

>NTDB_id=817321 QAP02_RS06550 WP_000963114.1 1365813..1366856(-) (recA) [Helicobacter pylori strain BS21]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=817321 QAP02_RS06550 WP_000963114.1 1365813..1366856(-) (recA) [Helicobacter pylori strain BS21]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCACATT
ATCGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGACGTGTATTATGCCAAGAG
GTTGGGCGTGGATACGGAAAATTTACTCGTTTCCCAACCAAGCACGGGAGAAGAAGCCTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGTGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGGAAAATCACCGGTGTTTTGCATAAGATGAA
CACCACGCTCATTTTTATCAATCAAATCAGGATGAAGATTGGCATGACGGGTTATGGGAGTCCAGAGACCACAACTGGAG
GTAACGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCCGCTTTAAAACAAAACGAACAGCATATC
GGTAACAGGGCTAAAGCTAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGGGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGACTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCCTATTGAAAGAAGATAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCGGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

98.559

100

0.986
  recA Helicobacter pylori 26695

97.983

100

0.98
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.744

94.524

0.735
  recA Neisseria gonorrhoeae MS11

65.538

93.66

0.614
  recA Neisseria gonorrhoeae MS11

65.538

93.66

0.614
  recA Neisseria gonorrhoeae strain FA1090

65.538

93.66

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

64.308

93.66

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

95.677

0.602
  recA Acinetobacter baumannii D1279779

63.303

94.236

0.597
  recA Acinetobacter baylyi ADP1

62.997

94.236

0.594
  recA Ralstonia pseudosolanacearum GMI1000

61.012

96.83

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.417

96.83

0.585
  recA Vibrio cholerae strain A1552

60.417

96.83

0.585
  recA Pseudomonas stutzeri DSM 10701

59.357

98.559

0.585
  recA Glaesserella parasuis strain SC1401

59.451

94.524

0.562
  recA Streptococcus pneumoniae D39

54.986

100

0.556
  recA Streptococcus pneumoniae Rx1

54.986

100

0.556
  recA Streptococcus pneumoniae R6

54.986

100

0.556
  recA Streptococcus pneumoniae TIGR4

54.986

100

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

53.782

100

0.553
  recA Streptococcus pyogenes NZ131

56.667

95.101

0.539
  recA Lactococcus lactis subsp. cremoris KW2

56.839

94.813

0.539
  recA Streptococcus mitis SK321

56.535

94.813

0.536
  recA Streptococcus mitis NCTC 12261

56.535

94.813

0.536
  recA Streptococcus mutans UA159

55.09

96.254

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.521

93.948

0.522