Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QA414_RS09405 Genome accession   NZ_CP122438
Coordinates   1903425..1904510 (-) Length   361 a.a.
NCBI ID   WP_006471638.1    Uniprot ID   M5JNZ5
Organism   Brucella intermedia strain ZL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1898425..1909510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA414_RS09385 (QA414_09385) - 1898952..1899641 (-) 690 WP_100650244.1 winged helix-turn-helix domain-containing protein -
  QA414_RS09390 (QA414_09390) - 1899723..1900052 (+) 330 WP_100650245.1 NIPSNAP family protein -
  QA414_RS09395 (QA414_09395) - 1900049..1900399 (+) 351 WP_100650246.1 antibiotic biosynthesis monooxygenase -
  QA414_RS09400 (QA414_09400) alaS 1900443..1903100 (-) 2658 WP_100650247.1 alanine--tRNA ligase -
  QA414_RS09405 (QA414_09405) recA 1903425..1904510 (-) 1086 WP_006471638.1 recombinase RecA Machinery gene
  QA414_RS09410 (QA414_09410) - 1904803..1905468 (-) 666 WP_006471639.1 OmpA family protein -
  QA414_RS09415 (QA414_09415) - 1905567..1906151 (-) 585 WP_100650248.1 transglycosylase SLT domain-containing protein -
  QA414_RS09420 (QA414_09420) - 1906377..1907693 (-) 1317 WP_278500777.1 replication-associated recombination protein A -
  QA414_RS09425 (QA414_09425) - 1907781..1909205 (-) 1425 WP_100650249.1 DegQ family serine endoprotease -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38823.20 Da        Isoelectric Point: 4.8172

>NTDB_id=815493 QA414_RS09405 WP_006471638.1 1903425..1904510(-) (recA) [Brucella intermedia strain ZL]
MSQNSLRLVEENSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPES
SGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
SIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYL
KDNPEVAREIETTLRQNAGLIAEQFLEDGGPEEDAGDAAEM

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=815493 QA414_RS09405 WP_006471638.1 1903425..1904510(-) (recA) [Brucella intermedia strain ZL]
ATGTCTCAGAATTCATTGCGACTTGTTGAGGAAAATTCAGTGGACAAGACTAAGGCTCTCGATGCGGCATTGTCGCAGAT
TGAAAGGGCGTTCGGCAAGGGCTCGATCATGCGCCTTGGCCAGAACGATCAGGTCGTAGAGATCGAAACAGTATCGACCG
GATCGCTCTCGCTGGACATCGCGCTCGGCGTTGGTGGCTTGCCTAAAGGACGTATTGTCGAGATTTACGGCCCGGAAAGC
TCCGGTAAGACGACACTGGCGCTGCACACGATCGCGGAGGCACAGAAGAAGGGCGGTATCTGTGCATTCGTCGATGCGGA
ACATGCGCTCGATCCGGTCTATGCCCGCAAGCTGGGCGTCGATCTTGAAAACCTGCTGATTTCGCAGCCGGATACCGGCG
AGCAGGCGCTTGAGATCACCGATACGCTCGTGCGTTCGGGCGCTATCGACGTTCTCGTCGTCGACTCGGTGGCTGCCTTG
ACGCCTCGCGCCGAAATCGAAGGTGAAATGGGTGACTCCCTGCCTGGTCTTCAGGCACGTCTCATGAGCCAGGCGCTTCG
CAAGCTTACCGCGTCTATCTCTCGTTCCAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGT
TCGGTTCGCCGGAAACGACGACTGGCGGTAACGCTCTCAAGTTCTATGCTTCGGTTCGTCTCGATATTCGCCGCATCGGC
TCGATCAAGGAACGTGATGAAGTCGTAGGCAACCAGACCCGTGTCAAGGTCGTCAAGAACAAGCTTGCTCCGCCCTTCAA
GCAGGTGGAGTTCGACATCATGTATGGTGCTGGCGTTTCCAAGACCGGTGAGTTGGTCGATCTTGGCGTGAAGGCTGGTG
TTGTCGAAAAGTCGGGTGCGTGGTTCTCCTATAATTCCCAACGGCTCGGGCAGGGGCGTGAAAACGCCAAGCAGTATCTC
AAGGACAACCCGGAAGTGGCCCGCGAGATCGAAACTACACTCCGTCAGAATGCCGGGCTGATTGCCGAGCAATTCCTCGA
AGATGGCGGACCGGAAGAAGACGCGGGCGACGCCGCCGAAATGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5JNZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

68.786

95.845

0.659
  recA Vibrio cholerae strain A1552

70.746

92.798

0.657
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.746

92.798

0.657
  recA Ralstonia pseudosolanacearum GMI1000

71.429

91.136

0.651
  recA Neisseria gonorrhoeae strain FA1090

66.954

96.399

0.645
  recA Neisseria gonorrhoeae MS11

66.954

96.399

0.645
  recA Neisseria gonorrhoeae MS11

66.954

96.399

0.645
  recA Glaesserella parasuis strain SC1401

66.762

96.676

0.645
  recA Acinetobacter baumannii D1279779

71.739

89.197

0.64
  recA Pseudomonas stutzeri DSM 10701

71.028

88.92

0.632
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.055

90.582

0.598
  recA Helicobacter pylori 26695

65.337

90.305

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

65.031

90.305

0.587
  recA Helicobacter pylori strain NCTC11637

65.031

90.305

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

90.582

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

62.883

90.305

0.568
  recA Streptococcus mitis SK321

61.631

91.69

0.565
  recA Streptococcus mitis NCTC 12261

61.329

91.69

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.125

88.643

0.56
  recA Streptococcus mutans UA159

59.467

93.629

0.557
  recA Streptococcus pneumoniae Rx1

60.423

91.69

0.554
  recA Streptococcus pneumoniae D39

60.423

91.69

0.554
  recA Streptococcus pneumoniae TIGR4

60.423

91.69

0.554
  recA Streptococcus pneumoniae R6

60.423

91.69

0.554
  recA Streptococcus pyogenes NZ131

60.486

91.136

0.551
  recA Lactococcus lactis subsp. cremoris KW2

57.988

93.629

0.543