Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QC826_RS01510 Genome accession   NZ_CP122407
Coordinates   336758..337873 (+) Length   371 a.a.
NCBI ID   WP_279764100.1    Uniprot ID   -
Organism   Rugamonas sp. DEMB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 331758..342873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC826_RS01490 (QC826_01490) - 331948..333999 (-) 2052 WP_279764096.1 sodium:solute symporter family protein -
  QC826_RS01495 (QC826_01495) - 333996..334298 (-) 303 WP_279764098.1 DUF4212 domain-containing protein -
  QC826_RS01500 (QC826_01500) - 334291..335823 (-) 1533 WP_279764099.1 sensor histidine kinase -
  QC826_RS01505 (QC826_01505) - 335820..336527 (-) 708 WP_093381984.1 response regulator transcription factor -
  QC826_RS01510 (QC826_01510) recA 336758..337873 (+) 1116 WP_279764100.1 recombinase RecA Machinery gene
  QC826_RS01515 (QC826_01515) recX 338033..338488 (+) 456 WP_279764101.1 recombination regulator RecX -
  QC826_RS01520 (QC826_01520) - 338885..339460 (+) 576 WP_279764102.1 DUF2889 domain-containing protein -
  QC826_RS01525 (QC826_01525) sucC 339544..340713 (+) 1170 WP_099418281.1 ADP-forming succinate--CoA ligase subunit beta -
  QC826_RS01530 (QC826_01530) sucD 340727..341608 (+) 882 WP_093381999.1 succinate--CoA ligase subunit alpha -
  QC826_RS01535 (QC826_01535) - 341773..342375 (+) 603 WP_279764103.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39782.53 Da        Isoelectric Point: 5.9193

>NTDB_id=815467 QC826_RS01510 WP_279764100.1 336758..337873(+) (recA) [Rugamonas sp. DEMB1]
MDDKKAVVPASEKAKALAAALAQIEKQFGKGSVMRMDSSTPIEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDMVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEILDLGSDAKIVEKSGSWYSYNGERIGQGKDNARAFLKER
PQLAWEIENKVRLSLGVRELPALTGDKAEKADKPEKADKADKAEAKLKAVD

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=815467 QC826_RS01510 WP_279764100.1 336758..337873(+) (recA) [Rugamonas sp. DEMB1]
ATGGACGATAAAAAAGCTGTTGTACCCGCATCTGAGAAGGCGAAGGCGCTGGCCGCCGCGCTGGCCCAGATTGAAAAGCA
GTTCGGCAAGGGTTCCGTCATGCGCATGGACTCCAGCACCCCGATCGAGGAAGTCCAGGTCGTCTCGACCGGCTCGCTCG
GCCTGGACATCGCGCTCGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTGGAAATCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTGACCCTGCAGACCATCGCCGAGATGCAAAAGCTGGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGCGCT
CGACGTCGGCTACGCGCAAAAGCTGGGCGTCAACCTGCACGAGCTGCTGATCTCGCAGCCGGACACGGGCGAACAGGCGC
TGGAAATCTGCGACGCCCTGGTCCGCTCGGGCAGCGTCGACATGGTGGTGATCGACTCGGTGGCGGCGCTGACGCCGCGC
GCCGAGATCGAGGGCGACATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCTTGATGTCGCAGGCGCTGCGCAAGCTGAC
CGGCTCGATCAACCGCACCAACACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAGCC
CGGAGACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCTCGATCAAG
TCGGGCGACGAGGTGATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCGCCGTTCAAGGAAGCCCA
CTTCGATATTCTTTATGGCGAAGGCACTTCCCGCGAAGGCGAGATCCTCGATCTGGGTTCGGATGCGAAGATCGTCGAGA
AGTCCGGTTCCTGGTACAGCTACAACGGCGAACGCATCGGCCAGGGCAAGGACAACGCCCGCGCCTTCCTCAAGGAGCGT
CCGCAGCTGGCCTGGGAGATCGAAAACAAGGTGCGCCTGTCGCTGGGCGTGCGCGAACTGCCGGCGCTGACCGGCGACAA
GGCCGAAAAAGCCGACAAGCCGGAAAAAGCCGACAAGGCCGACAAGGCCGAGGCCAAGCTGAAGGCGGTCGACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.633

92.453

0.755
  recA Neisseria gonorrhoeae MS11

70.69

93.801

0.663
  recA Neisseria gonorrhoeae MS11

70.69

93.801

0.663
  recA Neisseria gonorrhoeae strain FA1090

70.69

93.801

0.663
  recA Glaesserella parasuis strain SC1401

65.833

97.035

0.639
  recA Vibrio cholerae strain A1552

68.805

92.453

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.805

92.453

0.636
  recA Acinetobacter baylyi ADP1

70.898

87.062

0.617
  recA Acinetobacter baumannii D1279779

70.588

87.062

0.615
  recA Pseudomonas stutzeri DSM 10701

70.588

87.062

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.267

89.757

0.604
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

88.14

0.577
  recA Streptococcus mutans UA159

60.34

95.148

0.574
  recA Streptococcus pneumoniae D39

59.053

96.765

0.571
  recA Streptococcus pneumoniae TIGR4

59.053

96.765

0.571
  recA Streptococcus pneumoniae Rx1

59.053

96.765

0.571
  recA Streptococcus pneumoniae R6

59.053

96.765

0.571
  recA Helicobacter pylori 26695

63.83

88.679

0.566
  recA Helicobacter pylori strain NCTC11637

63.526

88.679

0.563
  recA Streptococcus mitis SK321

59.544

94.609

0.563
  recA Streptococcus pyogenes NZ131

63.222

88.679

0.561
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

87.871

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

62.121

88.949

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

87.062

0.55
  recA Streptococcus mitis NCTC 12261

61.631

89.218

0.55
  recA Lactococcus lactis subsp. cremoris KW2

61.329

89.218

0.547