Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QCB49_RS02405 Genome accession   NZ_CP122284
Coordinates   505150..506223 (+) Length   357 a.a.
NCBI ID   WP_023050971.1    Uniprot ID   -
Organism   Cetobacterium somerae strain MSU49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 500150..511223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCB49_RS02380 (QCB49_02350) - 500687..501475 (+) 789 WP_023050976.1 glycosyltransferase family 2 protein -
  QCB49_RS02385 (QCB49_02355) - 501432..502456 (+) 1025 Protein_466 glycosyltransferase family 9 protein -
  QCB49_RS02390 (QCB49_02360) waaF 502459..503472 (+) 1014 WP_407536131.1 lipopolysaccharide heptosyltransferase II -
  QCB49_RS02395 (QCB49_02365) - 503472..504143 (+) 672 WP_407536132.1 lipopolysaccharide core heptose(II) kinase RfaY -
  QCB49_RS02400 (QCB49_02370) - 504145..505143 (+) 999 WP_407536133.1 glycosyltransferase family 9 protein -
  QCB49_RS02405 (QCB49_02375) recA 505150..506223 (+) 1074 WP_023050971.1 recombinase RecA Machinery gene
  QCB49_RS02410 (QCB49_02380) - 506195..506755 (+) 561 WP_185891839.1 regulatory protein RecX -
  QCB49_RS02415 (QCB49_02385) - 506749..507474 (+) 726 WP_023050969.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  QCB49_RS02420 (QCB49_02390) pflB 507658..509898 (+) 2241 WP_023050968.1 formate C-acetyltransferase -
  QCB49_RS02425 (QCB49_02395) pflA 509925..510650 (+) 726 WP_023050967.1 pyruvate formate-lyase-activating protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38481.24 Da        Isoelectric Point: 4.9204

>NTDB_id=814992 QCB49_RS02405 WP_023050971.1 505150..506223(+) (recA) [Cetobacterium somerae strain MSU49]
MAKKSVDTTTDKSKALETALKQIRKDFGEGSIMKLGENQGMNIEVIPTGSINLDLALGLGGVPRGRIIEVYGAESSGKTT
IALHIVAQAQKMGGVAAFIDAEHALDPVYAKALGVDVEELLISQPDFGEQALEIADMLVRSGAIDVIVVDSVAALVPKAE
IDGEMSDQQMGLQARLMSKALRKLTGSINKSKTTMIFINQVRDKIGGFSFGPQTTTTGGKALKFYSSVRMEVKRVGSVKQ
GEEVIGNETVVKVTKNKVAPPFKEAKFQIMYGKGISRVGEILDMALDNDIVAKSGAWFSFGDIRLGQGKENVKARLETEP
ELLAAIEEKINQLLEKNTIVLHTSEGEEVEAEEITEE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=814992 QCB49_RS02405 WP_023050971.1 505150..506223(+) (recA) [Cetobacterium somerae strain MSU49]
ATGGCAAAAAAATCAGTAGATACAACAACAGATAAGTCAAAAGCTTTAGAAACAGCATTAAAACAGATAAGAAAAGATTT
TGGAGAAGGATCAATAATGAAACTTGGAGAAAATCAAGGTATGAATATTGAAGTTATTCCAACAGGAAGTATAAATTTAG
ATTTAGCTCTTGGTTTAGGAGGAGTTCCTAGAGGAAGAATTATAGAAGTATATGGTGCAGAGAGTTCAGGAAAAACAACA
ATAGCATTACATATAGTAGCTCAAGCACAAAAAATGGGAGGAGTAGCTGCATTTATAGATGCTGAACATGCTCTAGACCC
AGTATATGCAAAAGCTTTAGGTGTAGACGTAGAAGAGTTATTAATTTCACAGCCAGATTTTGGAGAGCAAGCGTTAGAGA
TTGCAGATATGTTAGTTAGATCAGGAGCAATTGATGTTATAGTTGTTGACTCTGTAGCAGCTTTAGTTCCAAAGGCAGAG
ATTGATGGAGAGATGTCAGACCAACAAATGGGACTTCAAGCTAGATTAATGTCAAAAGCTTTAAGAAAATTAACAGGTTC
TATAAATAAATCAAAAACAACAATGATATTTATAAACCAAGTTAGAGATAAAATTGGTGGATTTAGTTTTGGACCTCAGA
CAACTACAACAGGTGGAAAAGCTCTTAAATTCTATTCTTCAGTAAGAATGGAAGTTAAAAGAGTTGGAAGTGTAAAACAA
GGTGAAGAAGTTATAGGTAATGAAACAGTAGTAAAAGTTACAAAAAATAAGGTAGCTCCTCCATTTAAAGAAGCTAAATT
CCAAATTATGTATGGTAAGGGGATTTCTAGAGTAGGAGAAATTTTAGATATGGCCTTAGATAATGATATAGTTGCAAAAT
CTGGAGCTTGGTTCAGCTTTGGTGATATTAGACTAGGTCAAGGAAAAGAAAATGTAAAGGCTAGATTAGAAACTGAGCCA
GAATTATTAGCAGCAATTGAAGAGAAAATAAACCAACTTCTAGAAAAAAATACAATAGTACTACATACATCAGAGGGAGA
AGAAGTTGAAGCTGAAGAGATTACTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

62.319

96.639

0.602
  recA Neisseria gonorrhoeae strain FA1090

62.319

96.639

0.602
  recA Neisseria gonorrhoeae MS11

62.319

96.639

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

63.063

93.277

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.111

95.798

0.585
  recA Glaesserella parasuis strain SC1401

59.143

98.039

0.58
  recA Acinetobacter baylyi ADP1

60.35

96.078

0.58
  recA Acinetobacter baumannii D1279779

61.702

92.157

0.569
  recA Helicobacter pylori 26695

61.774

91.597

0.566
  recA Helicobacter pylori strain NCTC11637

61.468

91.597

0.563
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.265

98.319

0.563
  recA Vibrio cholerae strain A1552

57.265

98.319

0.563
  recA Ralstonia pseudosolanacearum GMI1000

60.542

92.997

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.491

90.196

0.555
  recA Streptococcus pneumoniae Rx1

60.308

91.036

0.549
  recA Streptococcus mitis SK321

60.308

91.036

0.549
  recA Streptococcus pneumoniae D39

60.308

91.036

0.549
  recA Streptococcus pneumoniae R6

60.308

91.036

0.549
  recA Streptococcus pneumoniae TIGR4

60.308

91.036

0.549
  recA Streptococcus mitis NCTC 12261

60

91.036

0.546
  recA Pseudomonas stutzeri DSM 10701

59.877

90.756

0.543
  recA Streptococcus pyogenes NZ131

59.568

90.756

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.958

93.277

0.541
  recA Streptococcus mutans UA159

59.259

90.756

0.538
  recA Latilactobacillus sakei subsp. sakei 23K

61.438

85.714

0.527
  recA Lactococcus lactis subsp. cremoris KW2

57.099

90.756

0.518